Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612134
Identifier: 120612134
GI number: 120612134
Start: 3847287
End: 3848540
Strand: Direct
Name: 120612134
Synonym: Aave_3483
Alternate gene names: NA
Gene position: 3847287-3848540 (Clockwise)
Preceding gene: 120612122
Following gene: 120612135
Centisome position: 71.87
GC content: 76.79
Gene sequence:
>1254_bases ATGTTCGAGATGGAGCAGGTGGCGCAGGGGCGCGCCCACCAGGGCGGTGGAATCTTCCAGCGTGACCTGGCCGCGGGCGC GGCCCAGGCGCAGCGCCGGCCCTTCCAGCGGCAGCGCGGCCAGTACCGCATCGGCGGCGGAGGCCCGGTCCGGCGCGGGC AGCGCGAGGTCGAAGAGCCCGTCGGCCGGCGTGCCCGTGAGCAGGGCCACGGCATCGGCCAGCGCGCGGCAGGCCTCCTC GTCGTCCCACGGCGCGTGGGCGGCGAGATGGCGCAGCAGCGGCACGTCGCCGACCAGGGAAGCGGCCTGGCACTGGAGGG CCCAGGGCATGTCCGGATGGCGCCCCTCCCGCAGGGCGACCGCGAGTTCGTAGCCCTCGCGCGCGGCCAGCAGCGCCAGC GCCGCGGGCGACCCGGGGGTGCGCGCCAGCACGGCGCGCGCGGCCGGTGTCTCGTGCGCGCTGCCCATGAGTGCCAGCGC CGCCAGCGCGGCTTCGGCGTCGTCGCCGTGCTCCACGGCGGCCAGGGCCCGGGCCTCGTCGCCGCGGCCGGTGCAGCGCC ACGCGCAGAGCACGGCCATGCCGCCGGGCAGGGACGCGGCCCAGGGCGCGACCGCTTCCGCGAAGGCATCCGACACGGCG GGCCGGGCGATCGCCAGCCGCAGCAGCAGGCGGCCGAGCGGGGAGCGCTCCGCCCCCTGCTGCCCGGCCAGCAGCGCCAC CCGGGGAGCGAGGTAGTCGCCCACCGTGCCATCGAAGGCGAAGCGCAGGGCGTCGCAGACCGCGCCCGGCTGGGCCTGCA GGTATTCGCCGCCCAGGTGCGCCAGTTCGGCGCCCGCGCGGCCGAGCTGCAGCTGCAGCACCTCCAGGCAGGCGAGCGCG AAGATGCGCGACGCCTCGTGCAGGGTTTCGTCCCCCGCGGCGGCGATGGCCTCCCGGCAGGCGGGCAGCACCTCGGGGGC GTGCGCCAGGTGCTGCTTCAGCCCGGCCAGCGCCTGAACGATGGCATCGTCGAACACGGCGATGGCCGGCGGCCGGGCGG CGGAACGCGGCAGCAGGTGGCTGCGGCGCCAGTACTGGGTGACCAGCGACCGCGCCATGCGCGCGGGCGGATCGGTCCAC GCCGGCAGGTCGGTGGCCCGGGGCACGGGCAGTTCGATGACGTTCATGCGAAAAGGCGCGCCGCAGGCCGCGGCGCGCGT GGGATCAAAGACAATGCCGGGCAGGAGGATCCCACCCGATGCTGGACAACCTGA
Upstream 100 bases:
>100_bases AGGCCGCCCGTTCCAGGACCGAGGCCGTGGCCGCTGCCAGGCCCTGCACGGGCATCAGGTCGTCGGCTTCGATCCAGAGC GCGCCCGCAAGGCGCGATGC
Downstream 100 bases:
>100_bases CGCCCTTCGCCGCGGAGCTGCTGCCGGGCCACCGGCCGGACGGCAGCGCGTGCCGGACGCTGGTCATCAAGGCCACGCTG GATTTCGCCGGCCGGCCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MFEMEQVAQGRAHQGGGIFQRDLAAGAAQAQRRPFQRQRGQYRIGGGGPVRRGQREVEEPVGRRAREQGHGIGQRAAGLL VVPRRVGGEMAQQRHVADQGSGLALEGPGHVRMAPLPQGDREFVALARGQQRQRRGRPGGARQHGARGRCLVRAAHECQR RQRGFGVVAVLHGGQGPGLVAAAGAAPRAEHGHAAGQGRGPGRDRFREGIRHGGPGDRQPQQQAAERGALRPLLPGQQRH PGSEVVAHRAIEGEAQGVADRARLGLQVFAAQVRQFGARAAELQLQHLQAGEREDARRLVQGFVPRGGDGLPAGGQHLGG VRQVLLQPGQRLNDGIVEHGDGRRPGGGTRQQVAAAPVLGDQRPRHARGRIGPRRQVGGPGHGQFDDVHAKRRAAGRGAR GIKDNAGQEDPTRCWTT
Sequences:
>Translated_417_residues MFEMEQVAQGRAHQGGGIFQRDLAAGAAQAQRRPFQRQRGQYRIGGGGPVRRGQREVEEPVGRRAREQGHGIGQRAAGLL VVPRRVGGEMAQQRHVADQGSGLALEGPGHVRMAPLPQGDREFVALARGQQRQRRGRPGGARQHGARGRCLVRAAHECQR RQRGFGVVAVLHGGQGPGLVAAAGAAPRAEHGHAAGQGRGPGRDRFREGIRHGGPGDRQPQQQAAERGALRPLLPGQQRH PGSEVVAHRAIEGEAQGVADRARLGLQVFAAQVRQFGARAAELQLQHLQAGEREDARRLVQGFVPRGGDGLPAGGQHLGG VRQVLLQPGQRLNDGIVEHGDGRRPGGGTRQQVAAAPVLGDQRPRHARGRIGPRRQVGGPGHGQFDDVHAKRRAAGRGAR GIKDNAGQEDPTRCWTT >Mature_417_residues MFEMEQVAQGRAHQGGGIFQRDLAAGAAQAQRRPFQRQRGQYRIGGGGPVRRGQREVEEPVGRRAREQGHGIGQRAAGLL VVPRRVGGEMAQQRHVADQGSGLALEGPGHVRMAPLPQGDREFVALARGQQRQRRGRPGGARQHGARGRCLVRAAHECQR RQRGFGVVAVLHGGQGPGLVAAAGAAPRAEHGHAAGQGRGPGRDRFREGIRHGGPGDRQPQQQAAERGALRPLLPGQQRH PGSEVVAHRAIEGEAQGVADRARLGLQVFAAQVRQFGARAAELQLQHLQAGEREDARRLVQGFVPRGGDGLPAGGQHLGG VRQVLLQPGQRLNDGIVEHGDGRRPGGGTRQQVAAAPVLGDQRPRHARGRIGPRRQVGGPGHGQFDDVHAKRRAAGRGAR GIKDNAGQEDPTRCWTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44485; Mature: 44485
Theoretical pI: Translated: 12.29; Mature: 12.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEMEQVAQGRAHQGGGIFQRDLAAGAAQAQRRPFQRQRGQYRIGGGGPVRRGQREVEEP CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCHHHHHHHH VGRRAREQGHGIGQRAAGLLVVPRRVGGEMAQQRHVADQGSGLALEGPGHVRMAPLPQGD HHHHHHHHCCCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCC REFVALARGQQRQRRGRPGGARQHGARGRCLVRAAHECQRRQRGFGVVAVLHGGQGPGLV HHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEE AAAGAAPRAEHGHAAGQGRGPGRDRFREGIRHGGPGDRQPQQQAAERGALRPLLPGQQRH EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC PGSEVVAHRAIEGEAQGVADRARLGLQVFAAQVRQFGARAAELQLQHLQAGEREDARRLV CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH QGFVPRGGDGLPAGGQHLGGVRQVLLQPGQRLNDGIVEHGDGRRPGGGTRQQVAAAPVLG HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCC DQRPRHARGRIGPRRQVGGPGHGQFDDVHAKRRAAGRGARGIKDNAGQEDPTRCWTT CCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFEMEQVAQGRAHQGGGIFQRDLAAGAAQAQRRPFQRQRGQYRIGGGGPVRRGQREVEEP CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCHHHHHHHH VGRRAREQGHGIGQRAAGLLVVPRRVGGEMAQQRHVADQGSGLALEGPGHVRMAPLPQGD HHHHHHHHCCCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCC REFVALARGQQRQRRGRPGGARQHGARGRCLVRAAHECQRRQRGFGVVAVLHGGQGPGLV HHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEE AAAGAAPRAEHGHAAGQGRGPGRDRFREGIRHGGPGDRQPQQQAAERGALRPLLPGQQRH EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC PGSEVVAHRAIEGEAQGVADRARLGLQVFAAQVRQFGARAAELQLQHLQAGEREDARRLV CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH QGFVPRGGDGLPAGGQHLGGVRQVLLQPGQRLNDGIVEHGDGRRPGGGTRQQVAAAPVLG HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCC DQRPRHARGRIGPRRQVGGPGHGQFDDVHAKRRAAGRGARGIKDNAGQEDPTRCWTT CCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA