Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yyaM [H]
Identifier: 120612122
GI number: 120612122
Start: 3833186
End: 3834088
Strand: Direct
Name: yyaM [H]
Synonym: Aave_3469
Alternate gene names: 120612122
Gene position: 3833186-3834088 (Clockwise)
Preceding gene: 120612119
Following gene: 120612134
Centisome position: 71.61
GC content: 72.87
Gene sequence:
>903_bases ATGACACAACGACTCTCGTCCGGCACCGCGGCCCTGCTCGTGGCCGCGCCGCTGCTCTGGGCCGGCAACGCGGTCGTCGG CCGCCTCGTGCATCCCCTCATCTCCCCGGTCGCGCTCAACTTCATCCGCTGGGCGCTGGCCTTCCTCGTGCTGCTGCCCC TGGCCCACGGCGTGCTGCGCCGCGGCAGCCCGCTGTGGCCGCACTGGCGCCGCTACGCGATGCTCGGGCTGCTGGGCATC GGCTGCTACAACGCGCTGCAGTACATGGCGCTGCAGACCTCCACGCCGCTCAACGTCACGCTCGTGGGCTCCGGCCTGCC GGTCTGGATGCTGGCCATCGGCACGCTCTGCTTCGGGGCCCGGGTGACGCGCGCGCAGGCGACGGGTGCGCTGCTCTCCA TCGCCGGCGTGCTGGTGGTGCTCAGCCGCGGCGAATGGGCGCAGCTGCTGGCGCTGCGGCTCGTGCCGGGCGATCTCTAC ATGGTGCTGGCCACCATCTCCTGGGCCTTCTACAGCTGGCTGCTGTCGCGCACCACCGAACCCGTGGGCCTGCGCGGCGA CTGGGCCGCCTTCCTCATGGCGCAGATGGTGTTCGGCCTGGCCTGGTCCGGCGCGTTCGCCGCCGGCGAATGGACGCTCG GCCACGCCCACGCCACCTGGGGCTGGCCGCTCGTGGCCGCCCTCGCCTTCATCGCGCTCGGCCCCGCCCTGCTCGCCTAC CGCTGCTGGGGCGTGGGCGTGCAGCGCGCCGGCCCGGCCGTGGCGAGTTTCTTCATCAACCTCACGCCACTCTTCGCCGC CGTGCTCTCCGCCCTGGTACTGGGCGAGACGCCCCACCTCTACCACGGCGCGGCGTTCGCGCTGATCGTGGCGGGGATCG TGGTGTCGTCGCGGCGGGGGTAA
Upstream 100 bases:
>100_bases ATGCGGACGGGCATCCGGCCCGCGGAATGGCCCCACGCGGGGGCCGGCGTGCATCCTGCCACGGATCGGCGAAGCCCGCA GGCCGGTACATTTCCAGGCC
Downstream 100 bases:
>100_bases GAAACTCTTGCTCCAGTCAGGCGAAGACCAGCAGCAGCGCTCCTGACAACATCAGAACGGCGGGCAGCCACCGCTCCCGC ATGCGGGTGGCCTTTGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MTQRLSSGTAALLVAAPLLWAGNAVVGRLVHPLISPVALNFIRWALAFLVLLPLAHGVLRRGSPLWPHWRRYAMLGLLGI GCYNALQYMALQTSTPLNVTLVGSGLPVWMLAIGTLCFGARVTRAQATGALLSIAGVLVVLSRGEWAQLLALRLVPGDLY MVLATISWAFYSWLLSRTTEPVGLRGDWAAFLMAQMVFGLAWSGAFAAGEWTLGHAHATWGWPLVAALAFIALGPALLAY RCWGVGVQRAGPAVASFFINLTPLFAAVLSALVLGETPHLYHGAAFALIVAGIVVSSRRG
Sequences:
>Translated_300_residues MTQRLSSGTAALLVAAPLLWAGNAVVGRLVHPLISPVALNFIRWALAFLVLLPLAHGVLRRGSPLWPHWRRYAMLGLLGI GCYNALQYMALQTSTPLNVTLVGSGLPVWMLAIGTLCFGARVTRAQATGALLSIAGVLVVLSRGEWAQLLALRLVPGDLY MVLATISWAFYSWLLSRTTEPVGLRGDWAAFLMAQMVFGLAWSGAFAAGEWTLGHAHATWGWPLVAALAFIALGPALLAY RCWGVGVQRAGPAVASFFINLTPLFAAVLSALVLGETPHLYHGAAFALIVAGIVVSSRRG >Mature_299_residues TQRLSSGTAALLVAAPLLWAGNAVVGRLVHPLISPVALNFIRWALAFLVLLPLAHGVLRRGSPLWPHWRRYAMLGLLGIG CYNALQYMALQTSTPLNVTLVGSGLPVWMLAIGTLCFGARVTRAQATGALLSIAGVLVVLSRGEWAQLLALRLVPGDLYM VLATISWAFYSWLLSRTTEPVGLRGDWAAFLMAQMVFGLAWSGAFAAGEWTLGHAHATWGWPLVAALAFIALGPALLAYR CWGVGVQRAGPAVASFFINLTPLFAAVLSALVLGETPHLYHGAAFALIVAGIVVSSRRG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31943; Mature: 31812
Theoretical pI: Translated: 11.10; Mature: 11.10
Prosite motif: PS00399 SUCCINYL_COA_LIG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRLSSGTAALLVAAPLLWAGNAVVGRLVHPLISPVALNFIRWALAFLVLLPLAHGVLR CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGSPLWPHWRRYAMLGLLGIGCYNALQYMALQTSTPLNVTLVGSGLPVWMLAIGTLCFGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH RVTRAQATGALLSIAGVLVVLSRGEWAQLLALRLVPGDLYMVLATISWAFYSWLLSRTTE HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC PVGLRGDWAAFLMAQMVFGLAWSGAFAAGEWTLGHAHATWGWPLVAALAFIALGPALLAY CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH RCWGVGVQRAGPAVASFFINLTPLFAAVLSALVLGETPHLYHGAAFALIVAGIVVSSRRG HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TQRLSSGTAALLVAAPLLWAGNAVVGRLVHPLISPVALNFIRWALAFLVLLPLAHGVLR CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGSPLWPHWRRYAMLGLLGIGCYNALQYMALQTSTPLNVTLVGSGLPVWMLAIGTLCFGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH RVTRAQATGALLSIAGVLVVLSRGEWAQLLALRLVPGDLYMVLATISWAFYSWLLSRTTE HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC PVGLRGDWAAFLMAQMVFGLAWSGAFAAGEWTLGHAHATWGWPLVAALAFIALGPALLAY CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH RCWGVGVQRAGPAVASFFINLTPLFAAVLSALVLGETPHLYHGAAFALIVAGIVVSSRRG HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]