Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612107
Identifier: 120612107
GI number: 120612107
Start: 3817041
End: 3818054
Strand: Direct
Name: 120612107
Synonym: Aave_3454
Alternate gene names: NA
Gene position: 3817041-3818054 (Clockwise)
Preceding gene: 120612106
Following gene: 120612108
Centisome position: 71.31
GC content: 69.13
Gene sequence:
>1014_bases ATGCGATCCGCCCTCCAGAAACTCGCCCGCGCCGCCGCGCTCGCCCTCGGCCTGGCCGCCACCGGCGGTGCCTTCGCGCA GACCGCCATCTGCTACAACTGCCCGCCCGAATGGGCCGACTGGGGCACCCAGCTCAAGGCCATCAAGGCCCGGACCGGCG TGACCGTGCCGCCGGACAACAAGAACTCCGGCCAGTCGCTCGCACAGCTGTCCGCCGAACGCGCCAGCCCCGTGGCCGAC GTGACCTACCTCGGCGTGACCTTCGCCATCCAGGCGCAGAAGGATGGCCTGCTGGGCACCTACCAGCCCGCCGGCTGGAA GGACATTCCCGACGGCCTGAAGGACCCGGCCGGCCACTGGTTCACGATCCATTCGGGCACGCTGGGCTTCATGGTCAACG TCGATGCGCTGGGCGGCAAGCCGGTGCCGAAGTCGTGGGCCGACCTGCTCAAGCCCGAGTACAAGGGCCTGATCGGCTAT CTGGACCCGGCTTCGGCCTTCGTGGGCTACGTGGGCGCGGTGGCCGCCAACCAGGCGCGCGGCGGCACGCTGGAGAACTT CGGCCCCGGCATCGACTACTTCAAGGCGCTGCAGAAGAACGAGCCGATCGTGCCCAAGCAGACCGCCTATGCGCGCGTGC TCTCGGGCGAGATCGCGATCCTGCTGGACTACGACTTCAACGCCTACCGCGCGAAGTACAAGGACGGCGCCAACGTGCAG TTCGTCATCCCCGCCGAGGGCACGGTGGTGGTGCCCTACGTGATGGGCATGGTGGCGAAGGCGCCCCATGCCGCCGACGC GAAGAAGGTGCTGGATTTCGTGCTCTCCGACGAGGGCCAGGCGATCTGGGCCAAGGCCTACCTGCGGCCGGTGCGCGCCG CCGCCATGCCCGCCGACGTGCAGGCCCGCTTCCTGCCCGCCAGCGAATATGCCCGCGCGAAGACGGTGGACTACGGCCGC ATGGCCGCGGTGCAGAAGGCGTTCTCCGACCGCTACCTGCGGGACGTGAAATGA
Upstream 100 bases:
>100_bases CCCCCTGCCCCGCCCAGATCGGTCCGTTCCGCCCGCTTTCTGCTTTTTCTCCGCCACGTTCCATCCACCCCCTTTTTCTT TCTTCGCACAGGAGCCATCG
Downstream 100 bases:
>100_bases CGGCACGCCACGGCGGCTTCGCTCCTTCGCGCGCCCTGCTGGCCGCGTGCGCCGCGCCGGCCGTGGCGTTCTTCGCGGCC TTCTGGCTGCTGCCCACGGC
Product: putative periplasmic solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRSALQKLARAAALALGLAATGGAFAQTAICYNCPPEWADWGTQLKAIKARTGVTVPPDNKNSGQSLAQLSAERASPVAD VTYLGVTFAIQAQKDGLLGTYQPAGWKDIPDGLKDPAGHWFTIHSGTLGFMVNVDALGGKPVPKSWADLLKPEYKGLIGY LDPASAFVGYVGAVAANQARGGTLENFGPGIDYFKALQKNEPIVPKQTAYARVLSGEIAILLDYDFNAYRAKYKDGANVQ FVIPAEGTVVVPYVMGMVAKAPHAADAKKVLDFVLSDEGQAIWAKAYLRPVRAAAMPADVQARFLPASEYARAKTVDYGR MAAVQKAFSDRYLRDVK
Sequences:
>Translated_337_residues MRSALQKLARAAALALGLAATGGAFAQTAICYNCPPEWADWGTQLKAIKARTGVTVPPDNKNSGQSLAQLSAERASPVAD VTYLGVTFAIQAQKDGLLGTYQPAGWKDIPDGLKDPAGHWFTIHSGTLGFMVNVDALGGKPVPKSWADLLKPEYKGLIGY LDPASAFVGYVGAVAANQARGGTLENFGPGIDYFKALQKNEPIVPKQTAYARVLSGEIAILLDYDFNAYRAKYKDGANVQ FVIPAEGTVVVPYVMGMVAKAPHAADAKKVLDFVLSDEGQAIWAKAYLRPVRAAAMPADVQARFLPASEYARAKTVDYGR MAAVQKAFSDRYLRDVK >Mature_337_residues MRSALQKLARAAALALGLAATGGAFAQTAICYNCPPEWADWGTQLKAIKARTGVTVPPDNKNSGQSLAQLSAERASPVAD VTYLGVTFAIQAQKDGLLGTYQPAGWKDIPDGLKDPAGHWFTIHSGTLGFMVNVDALGGKPVPKSWADLLKPEYKGLIGY LDPASAFVGYVGAVAANQARGGTLENFGPGIDYFKALQKNEPIVPKQTAYARVLSGEIAILLDYDFNAYRAKYKDGANVQ FVIPAEGTVVVPYVMGMVAKAPHAADAKKVLDFVLSDEGQAIWAKAYLRPVRAAAMPADVQARFLPASEYARAKTVDYGR MAAVQKAFSDRYLRDVK
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 36046; Mature: 36046
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSALQKLARAAALALGLAATGGAFAQTAICYNCPPEWADWGTQLKAIKARTGVTVPPDN CHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC KNSGQSLAQLSAERASPVADVTYLGVTFAIQAQKDGLLGTYQPAGWKDIPDGLKDPAGHW CCCHHHHHHHHHHHCCCCHHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCE FTIHSGTLGFMVNVDALGGKPVPKSWADLLKPEYKGLIGYLDPASAFVGYVGAVAANQAR EEEECCCEEEEEEEECCCCCCCCHHHHHHHCHHHHCCEEECCHHHHHHHHHHHHHHCCCC GGTLENFGPGIDYFKALQKNEPIVPKQTAYARVLSGEIAILLDYDFNAYRAKYKDGANVQ CCCCHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCEE FVIPAEGTVVVPYVMGMVAKAPHAADAKKVLDFVLSDEGQAIWAKAYLRPVRAAAMPADV EEECCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC QARFLPASEYARAKTVDYGRMAAVQKAFSDRYLRDVK CEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRSALQKLARAAALALGLAATGGAFAQTAICYNCPPEWADWGTQLKAIKARTGVTVPPDN CHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC KNSGQSLAQLSAERASPVADVTYLGVTFAIQAQKDGLLGTYQPAGWKDIPDGLKDPAGHW CCCHHHHHHHHHHHCCCCHHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCE FTIHSGTLGFMVNVDALGGKPVPKSWADLLKPEYKGLIGYLDPASAFVGYVGAVAANQAR EEEECCCEEEEEEEECCCCCCCCHHHHHHHCHHHHCCEEECCHHHHHHHHHHHHHHCCCC GGTLENFGPGIDYFKALQKNEPIVPKQTAYARVLSGEIAILLDYDFNAYRAKYKDGANVQ CCCCHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCEE FVIPAEGTVVVPYVMGMVAKAPHAADAKKVLDFVLSDEGQAIWAKAYLRPVRAAAMPADV EEECCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC QARFLPASEYARAKTVDYGRMAAVQKAFSDRYLRDVK CEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]