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The map label for this gene is yiaM [C]

Identifier: 120612099

GI number: 120612099

Start: 3807471

End: 3807986

Strand: Reverse

Name: yiaM [C]

Synonym: Aave_3446

Alternate gene names: 120612099

Gene position: 3807986-3807471 (Counterclockwise)

Preceding gene: 120612100

Following gene: 120612098

Centisome position: 71.14

GC content: 68.8

Gene sequence:

>516_bases
ATGCTCCCTCGCTTCGAGCGCGCCCTGGTCGCCGGCAACCGCTGGCTGCTCATCCTCCTGCTGCTGGCCATGGCCTGCAT
CGTCTTCGCCAACGTGGTGCTGCGCTACACCACGGGCGACTCCATCGTCTGGGCCGAAGAAGTGGCGCGCCACCTGATGA
TCTGGTGCACCTTCCTGGGCGCCGGTCTGGTGCTGCGCTTCGGCGGCCACGTGGCCATCGACAACCTGCACCACGTGCTG
GGCGAGCGCGGCGCGCGGGCGCTGCGCGGCTGCATCGTGGTGGCGCTGGGCGCGTTCTTCCTGGTGATGGCCTGGTTCTC
GGTGCAGTACGTCTGGGCCACGCGCTTCCAGACCACGCCCGCCACCGACATCCCCTTCGCCTGGATCTACGCGGCCATGC
CGGCGGGCTTCGTGCTGCTCTTCGTGCACCTGCTCTTCATGGCGCGCGGCTACATCCGGGACGGCCGCTACGTCGAATCC
GACGAGATGGACGCCGAATCGGCGGCCTCCCTGTGA

Upstream 100 bases:

>100_bases
TGAGCCGGGGCGGGCGGCATGGGCCGCCTGCCTTGCGGCTCCATCGGCCTGTGCCCGGCGCGTCCGGGCTTTGTCTTTTC
CAGCCCCCATCCATCCCGCC

Downstream 100 bases:

>100_bases
TGGCCCGCAGCAGAAGGAACTGACGCCATGGCCATCACCCTCTTCGTTTCCGCCCTCCTGCTGATGGCGCTGGGCTTTCC
CGTCGCGTTCGCGCTCGCCA

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: C4-Dicarboxylate Transport System Permease Small Protein; Trap-Family Transport System Permease Protein; ABC Transporter Permease; TRAP Dicarboxylate Transporter Subunit DctQ; TRAP-Family Transport System Permease Protein; TRAP Transporter Small Transmembrane Protein; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MLPRFERALVAGNRWLLILLLLAMACIVFANVVLRYTTGDSIVWAEEVARHLMIWCTFLGAGLVLRFGGHVAIDNLHHVL
GERGARALRGCIVVALGAFFLVMAWFSVQYVWATRFQTTPATDIPFAWIYAAMPAGFVLLFVHLLFMARGYIRDGRYVES
DEMDAESAASL

Sequences:

>Translated_171_residues
MLPRFERALVAGNRWLLILLLLAMACIVFANVVLRYTTGDSIVWAEEVARHLMIWCTFLGAGLVLRFGGHVAIDNLHHVL
GERGARALRGCIVVALGAFFLVMAWFSVQYVWATRFQTTPATDIPFAWIYAAMPAGFVLLFVHLLFMARGYIRDGRYVES
DEMDAESAASL
>Mature_171_residues
MLPRFERALVAGNRWLLILLLLAMACIVFANVVLRYTTGDSIVWAEEVARHLMIWCTFLGAGLVLRFGGHVAIDNLHHVL
GERGARALRGCIVVALGAFFLVMAWFSVQYVWATRFQTTPATDIPFAWIYAAMPAGFVLLFVHLLFMARGYIRDGRYVES
DEMDAESAASL

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19140; Mature: 19140

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPRFERALVAGNRWLLILLLLAMACIVFANVVLRYTTGDSIVWAEEVARHLMIWCTFLG
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AGLVLRFGGHVAIDNLHHVLGERGARALRGCIVVALGAFFLVMAWFSVQYVWATRFQTTP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATDIPFAWIYAAMPAGFVLLFVHLLFMARGYIRDGRYVESDEMDAESAASL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MLPRFERALVAGNRWLLILLLLAMACIVFANVVLRYTTGDSIVWAEEVARHLMIWCTFLG
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AGLVLRFGGHVAIDNLHHVLGERGARALRGCIVVALGAFFLVMAWFSVQYVWATRFQTTP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATDIPFAWIYAAMPAGFVLLFVHLLFMARGYIRDGRYVESDEMDAESAASL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA