Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is mmgC [H]
Identifier: 120612092
GI number: 120612092
Start: 3797089
End: 3798294
Strand: Direct
Name: mmgC [H]
Synonym: Aave_3439
Alternate gene names: 120612092
Gene position: 3797089-3798294 (Clockwise)
Preceding gene: 120612091
Following gene: 120612093
Centisome position: 70.94
GC content: 67.16
Gene sequence:
>1206_bases ATGGACCTTGCTTTCACCCCCGAAGAACAGGCCTTCCGCGAAGAGATTCGCGCGTGGGTCCGCGAGCATCTGCCGGCCGA GACCGCGCACAAGGTGCACAACGCGCTGCGCCTGACGCGCGACGACCTGCAGGGCTGGGCGAAGATCCTCGGCAAGAAGG GCTGGCTGGGCTTCGGCTGGCCCAAGCAGTTCGGCGGCCCCGGCTGGACGGCCGTGCAGAAGCATTTGTTCGAGGAAGAG TGCGCGCTGGCCGGTGCGCCCCGCATCGTGCCGTTCGGCCCGGTGATGGTGGCCCCCGTGATCATGGCCTTCGGTTCGCC CGAGCAGCAGCAGCGCTTCCTGCCCGGCATCGCGAGCGGCGAGGTCTGGTGGAGCCAGGGCTACAGCGAGCCGGGCTCGG GCTCGGACCTGGCCAGCCTCAAGACCCGCGCCGAGCGCCGCGGCGACAAGTACATCGTCAACGGCCAGAAAACGTGGACC ACGCTGGGCCAGTACGGCGACTGGATGTTCAACCTCGTGCGCACCAGCACGGAAGGCAAGCCGCAGACCGGCATCAGCTT CCTGCTGCTGGACATGAAGTCGCCCGGCGTCACCGTGCGGCCGATCAAGCTGCTGGACGGCGAATGCGAGGTGAACGAGG TGTTCTTCGACAACGTCGAAGTGCCCGCCGAGAACCTGATCGGCGAGGAGAACAAGGGCTGGACCTACGCCAAGCACCTG CTCTCCCACGAGCGCACGAACATCGCGGACGTGAATCGCAGCAAGCGCGAGCTCGAGCGCCTCAAACGCATCGCGAAGAC CGAGGGCGTGTGGGACGACCCGCGCTTGCGCGACCAGATCGCGCTGCTGGAGGTGGACATCGTGGCGCTGGAGATGCTGG TGCTGCGCGTGCTCTCGGCCGAGAAGTCGGGCAAGAACTCGCTGGACATCGCCGGCCTGCTCAAGATCCGCGGCAGCGAG ATCCAGCAGCGCTATGCCGAACTGATGATGCTGGCCGCCGGCCCGTACTCCCTGCCCTTCATCGAAGAAGCCATGGAGGC CGGCTGGCAGGGCGACGCGGCGATGGGCGCGCTGGGCGGCTACCCGGGCGGCACGGTGGCGAACGCGCCGCTGGCGTCCA CCTACTTCAACCTGCGCAAGACCACGATCTACGGGGGGAGCAACGAAGTCCAGCGAAATATCGTCGCTCAGACGGTGCTG GGCTGA
Upstream 100 bases:
>100_bases CAGCTCGGGGTGTCGCTCCCCGGACAGCCATAAAAAGCACGACCGTGCTACAAATTGCGGTATCGCGCCGGCCACGCCGG CGCTCACACGGAGACACCGC
Downstream 100 bases:
>100_bases TTTGCTTCCGAGGGAGCGACGATGTTTCGCTGGCGCGGTAACGCACCGCTCCCCCAGGCCCCCTCCGCGAGGGGGCTCCA GCATGAGCTTCGCTGATCTT
Product: acyl-CoA dehydrogenase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MDLAFTPEEQAFREEIRAWVREHLPAETAHKVHNALRLTRDDLQGWAKILGKKGWLGFGWPKQFGGPGWTAVQKHLFEEE CALAGAPRIVPFGPVMVAPVIMAFGSPEQQQRFLPGIASGEVWWSQGYSEPGSGSDLASLKTRAERRGDKYIVNGQKTWT TLGQYGDWMFNLVRTSTEGKPQTGISFLLLDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRSKRELERLKRIAKTEGVWDDPRLRDQIALLEVDIVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYAELMMLAAGPYSLPFIEEAMEAGWQGDAAMGALGGYPGGTVANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVL G
Sequences:
>Translated_401_residues MDLAFTPEEQAFREEIRAWVREHLPAETAHKVHNALRLTRDDLQGWAKILGKKGWLGFGWPKQFGGPGWTAVQKHLFEEE CALAGAPRIVPFGPVMVAPVIMAFGSPEQQQRFLPGIASGEVWWSQGYSEPGSGSDLASLKTRAERRGDKYIVNGQKTWT TLGQYGDWMFNLVRTSTEGKPQTGISFLLLDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRSKRELERLKRIAKTEGVWDDPRLRDQIALLEVDIVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYAELMMLAAGPYSLPFIEEAMEAGWQGDAAMGALGGYPGGTVANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVL G >Mature_401_residues MDLAFTPEEQAFREEIRAWVREHLPAETAHKVHNALRLTRDDLQGWAKILGKKGWLGFGWPKQFGGPGWTAVQKHLFEEE CALAGAPRIVPFGPVMVAPVIMAFGSPEQQQRFLPGIASGEVWWSQGYSEPGSGSDLASLKTRAERRGDKYIVNGQKTWT TLGQYGDWMFNLVRTSTEGKPQTGISFLLLDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRSKRELERLKRIAKTEGVWDDPRLRDQIALLEVDIVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYAELMMLAAGPYSLPFIEEAMEAGWQGDAAMGALGGYPGGTVANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVL G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501857, Length=411, Percent_Identity=27.007299270073, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI226958412, Length=250, Percent_Identity=29.2, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI226958414, Length=217, Percent_Identity=30.8755760368664, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI4501859, Length=414, Percent_Identity=25.1207729468599, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI187960098, Length=404, Percent_Identity=23.7623762376238, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI4557231, Length=272, Percent_Identity=27.2058823529412, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI4557233, Length=373, Percent_Identity=27.3458445040214, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI7656849, Length=211, Percent_Identity=31.7535545023697, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI21361497, Length=358, Percent_Identity=26.536312849162, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI4557235, Length=213, Percent_Identity=30.5164319248826, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI76496475, Length=213, Percent_Identity=30.5164319248826, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI4503943, Length=231, Percent_Identity=29.004329004329, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI7669494, Length=231, Percent_Identity=29.004329004329, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI87081958, Length=307, Percent_Identity=25.0814332247557, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1786223, Length=409, Percent_Identity=24.4498777506112, Blast_Score=84, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17508101, Length=367, Percent_Identity=28.6103542234332, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17569725, Length=350, Percent_Identity=26.2857142857143, Blast_Score=111, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17534899, Length=354, Percent_Identity=24.8587570621469, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17538396, Length=253, Percent_Identity=31.2252964426877, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17505929, Length=205, Percent_Identity=32.6829268292683, Blast_Score=105, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17570075, Length=268, Percent_Identity=25.7462686567164, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17551932, Length=205, Percent_Identity=31.7073170731707, Blast_Score=102, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71990804, Length=304, Percent_Identity=25.9868421052632, Blast_Score=92, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71985184, Length=208, Percent_Identity=30.2884615384615, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71985192, Length=208, Percent_Identity=30.2884615384615, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17506239, Length=365, Percent_Identity=24.9315068493151, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI32563615, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17533517, Length=220, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982178, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI21355753, Length=213, Percent_Identity=32.8638497652582, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24666513, Length=294, Percent_Identity=27.2108843537415, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI281363737, Length=380, Percent_Identity=24.4736842105263, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24660351, Length=181, Percent_Identity=32.5966850828729, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI21356377, Length=407, Percent_Identity=24.0786240786241, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI24646207, Length=417, Percent_Identity=23.021582733813, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI19920834, Length=232, Percent_Identity=30.1724137931034, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 44454; Mature: 44454
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLAFTPEEQAFREEIRAWVREHLPAETAHKVHNALRLTRDDLQGWAKILGKKGWLGFGW CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PKQFGGPGWTAVQKHLFEEECALAGAPRIVPFGPVMVAPVIMAFGSPEQQQRFLPGIASG CHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCC EVWWSQGYSEPGSGSDLASLKTRAERRGDKYIVNGQKTWTTLGQYGDWMFNLVRTSTEGK CHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC PQTGISFLLLDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHL CCCCCEEEEEECCCCCCEEEEEEEECCCCCCHHHEECCCCCCHHHHCCCCCCCHHHHHHH LSHERTNIADVNRSKRELERLKRIAKTEGVWDDPRLRDQIALLEVDIVALEMLVLRVLSA HHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EKSGKNSLDIAGLLKIRGSEIQQRYAELMMLAAGPYSLPFIEEAMEAGWQGDAAMGALGG CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHCCC YPGGTVANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVLG CCCCCCCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure MDLAFTPEEQAFREEIRAWVREHLPAETAHKVHNALRLTRDDLQGWAKILGKKGWLGFGW CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PKQFGGPGWTAVQKHLFEEECALAGAPRIVPFGPVMVAPVIMAFGSPEQQQRFLPGIASG CHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCC EVWWSQGYSEPGSGSDLASLKTRAERRGDKYIVNGQKTWTTLGQYGDWMFNLVRTSTEGK CHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC PQTGISFLLLDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHL CCCCCEEEEEECCCCCCEEEEEEEECCCCCCHHHEECCCCCCHHHHCCCCCCCHHHHHHH LSHERTNIADVNRSKRELERLKRIAKTEGVWDDPRLRDQIALLEVDIVALEMLVLRVLSA HHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EKSGKNSLDIAGLLKIRGSEIQQRYAELMMLAAGPYSLPFIEEAMEAGWQGDAAMGALGG CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHCCC YPGGTVANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVLG CCCCCCCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759838; 8969508; 9384377 [H]