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The map label for this gene is ydcR [H]

Identifier: 120612083

GI number: 120612083

Start: 3787977

End: 3789542

Strand: Reverse

Name: ydcR [H]

Synonym: Aave_3430

Alternate gene names: 120612083

Gene position: 3789542-3787977 (Counterclockwise)

Preceding gene: 120612085

Following gene: 120612079

Centisome position: 70.8

GC content: 71.84

Gene sequence:

>1566_bases
ATGACCGATTCCGTCGCCGAATTCCCCCTGTCGCCCGCGGCGCGGGCCGCGGACCAGCCGCGCTACCGGCAGATCGCGGG
CCTGTACGTGCAGGCCATCGCGGCGGGCAGCCTGCAGCCGGGCATGCGCCTGCCGTCGGTGCGGGAGCTGTGCCAGCGGC
ATGGCGTGAGCCTCACCACCGCCCTGCAGGTGCTGCGGCACCTAGAGGCCGAAGGCTTCGCCCAGGCGCGCGAACGGGTG
GGGTACTTCGCCGCCGTTCCTGCCCGTGTCGCCTCCCTGCCGGCGGCCCGCGAGCCCGAACTGCACGAGCCGCTGCCGCC
CGACCCGCACGTGTTCGCCGGCATCAACGAACGCATTTCCACGTTCCTGGAGAAGGCCCGCCGTGCGCCTTCCGCGCTGG
ACCTGGGCAGCGCCATGCCCGCGCCCGCGCTGTTCGATGCCGAGGCGCTCAACCGCCTCGCGGTCCGGCTGCTGCGCGAA
CAGCCCGACATCCTCGTCTATGGCCCTTCCGCTCCGTCCACGCACCCGGAGTTCCAGCGGGCCATGGCGCACCATGCGCT
CAGCTTCGGCCTGAGCCTCGCGCCCGAGGATATCGGCGCCACGCACGGCAACTCGGAGGCCGTGAACCTCGCGCTGGACG
CGGTGGCCGAGCCCGGCGATGTGATCGCGGTCGAATCCCCGACCTTCTTCGGCATCCTGCAGGCGATCGAGGTGCGGGGC
CTGCGCGCGCTCGAGATTCCCTGCAGCCCCCACACCGGCATATCGATCGAGGCCCTGGAACTCGCGGCCCGCAACGAGCC
GCGGCTCAAGGCCGTGGTGGTGGTGCCGCACCTGCAGATGCCCCAGGGCAGCGTCATGCCGGACTCCCACAAGGAGCGCC
TCGTCGCGCTCTGCGTGGAGCACGGCCTCGCACTGATCGAAGACGATATCTACCGCGAGTTCGTCGAATCGCCCCAGCCG
ATGCGGCCCGCCAAGGCCTGGGACCGCCCGGGCGATGCGGGACAGGTGATCTACTGCGCCTCCCTCAGCAAGAGCTTCGC
GCCGGGTTTGCGCCAGGGCTGGATGAGCGCCGGCCGCTGGAATGCGCGCGTGCAGATGCTCAAGTTCGCCCGCACGCGCA
ACATGCAGACGTGGTCGCAACTGCTGGCGGCGCGCACCGTGGGTTCGCCCGCGTACGAGCGGCACCTGCGCCGCATGCGC
GCTTCGCTGAAGGAGCAGCGCGAGCAGTCGGCCCGCGCCGTCGCCCGTTACTTCCCCGCGGGAACCCGCCTGAGCCTGCC
GCCCGGCGGGATCAGCCTGTGGCTCGAGTTGCCCGCGGGCCTGTCCTCCACGCGGCTCTACGACGATGCCCTGGCACGCG
GCATCCGTGTGGCGCCGGGGCCCATGTTCTCCAATACCGGGCGCTACGAACGTTTCCTGCGGCTGAGCTGCGGCATGCCG
TTCACGCCTGCGGTGGAGGAGGGGTACCGGGTGCTCGGCGAATTGCTGGCCGGCCAGCGCAATACCGTGCCGGAAACCGG
CCGCCCGCCGCAGCAGGGCGGGGGCCGCCGGGCCGCTGCGGCCTGA

Upstream 100 bases:

>100_bases
TCACTGTGTGGCCTGTCTGTATCTGTGCGGCCGTGCGATGCCGCGGCATGATGGCCGGCACTGCTTTCCCGCCTCCAGCG
CCTTTCGGGGCGTCCCCGCC

Downstream 100 bases:

>100_bases
GGCCACGCCAAAAAGGAACAGCCGGAAAAAGAAAAGCCGCCCTCGGTGGGGCGGCTTTCACGGGAAAGCGCTGGAAGCGG
CTGGCGCCTTACTTCAGCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MTDSVAEFPLSPAARAADQPRYRQIAGLYVQAIAAGSLQPGMRLPSVRELCQRHGVSLTTALQVLRHLEAEGFAQARERV
GYFAAVPARVASLPAAREPELHEPLPPDPHVFAGINERISTFLEKARRAPSALDLGSAMPAPALFDAEALNRLAVRLLRE
QPDILVYGPSAPSTHPEFQRAMAHHALSFGLSLAPEDIGATHGNSEAVNLALDAVAEPGDVIAVESPTFFGILQAIEVRG
LRALEIPCSPHTGISIEALELAARNEPRLKAVVVVPHLQMPQGSVMPDSHKERLVALCVEHGLALIEDDIYREFVESPQP
MRPAKAWDRPGDAGQVIYCASLSKSFAPGLRQGWMSAGRWNARVQMLKFARTRNMQTWSQLLAARTVGSPAYERHLRRMR
ASLKEQREQSARAVARYFPAGTRLSLPPGGISLWLELPAGLSSTRLYDDALARGIRVAPGPMFSNTGRYERFLRLSCGMP
FTPAVEEGYRVLGELLAGQRNTVPETGRPPQQGGGRRAAAA

Sequences:

>Translated_521_residues
MTDSVAEFPLSPAARAADQPRYRQIAGLYVQAIAAGSLQPGMRLPSVRELCQRHGVSLTTALQVLRHLEAEGFAQARERV
GYFAAVPARVASLPAAREPELHEPLPPDPHVFAGINERISTFLEKARRAPSALDLGSAMPAPALFDAEALNRLAVRLLRE
QPDILVYGPSAPSTHPEFQRAMAHHALSFGLSLAPEDIGATHGNSEAVNLALDAVAEPGDVIAVESPTFFGILQAIEVRG
LRALEIPCSPHTGISIEALELAARNEPRLKAVVVVPHLQMPQGSVMPDSHKERLVALCVEHGLALIEDDIYREFVESPQP
MRPAKAWDRPGDAGQVIYCASLSKSFAPGLRQGWMSAGRWNARVQMLKFARTRNMQTWSQLLAARTVGSPAYERHLRRMR
ASLKEQREQSARAVARYFPAGTRLSLPPGGISLWLELPAGLSSTRLYDDALARGIRVAPGPMFSNTGRYERFLRLSCGMP
FTPAVEEGYRVLGELLAGQRNTVPETGRPPQQGGGRRAAAA
>Mature_520_residues
TDSVAEFPLSPAARAADQPRYRQIAGLYVQAIAAGSLQPGMRLPSVRELCQRHGVSLTTALQVLRHLEAEGFAQARERVG
YFAAVPARVASLPAAREPELHEPLPPDPHVFAGINERISTFLEKARRAPSALDLGSAMPAPALFDAEALNRLAVRLLREQ
PDILVYGPSAPSTHPEFQRAMAHHALSFGLSLAPEDIGATHGNSEAVNLALDAVAEPGDVIAVESPTFFGILQAIEVRGL
RALEIPCSPHTGISIEALELAARNEPRLKAVVVVPHLQMPQGSVMPDSHKERLVALCVEHGLALIEDDIYREFVESPQPM
RPAKAWDRPGDAGQVIYCASLSKSFAPGLRQGWMSAGRWNARVQMLKFARTRNMQTWSQLLAARTVGSPAYERHLRRMRA
SLKEQREQSARAVARYFPAGTRLSLPPGGISLWLELPAGLSSTRLYDDALARGIRVAPGPMFSNTGRYERFLRLSCGMPF
TPAVEEGYRVLGELLAGQRNTVPETGRPPQQGGGRRAAAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=21.6300940438871, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=21.6300940438871, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI1787710, Length=476, Percent_Identity=35.5042016806723, Blast_Score=261, Evalue=5e-71,
Organism=Escherichia coli, GI1790797, Length=478, Percent_Identity=33.6820083682008, Blast_Score=247, Evalue=1e-66,
Organism=Saccharomyces cerevisiae, GI6321236, Length=358, Percent_Identity=23.7430167597765, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 56658; Mature: 56526

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSVAEFPLSPAARAADQPRYRQIAGLYVQAIAAGSLQPGMRLPSVRELCQRHGVSLTT
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHH
ALQVLRHLEAEGFAQARERVGYFAAVPARVASLPAAREPELHEPLPPDPHVFAGINERIS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHH
TFLEKARRAPSALDLGSAMPAPALFDAEALNRLAVRLLREQPDILVYGPSAPSTHPEFQR
HHHHHHHCCCCHHCCCCCCCCCCHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
AMAHHALSFGLSLAPEDIGATHGNSEAVNLALDAVAEPGDVIAVESPTFFGILQAIEVRG
HHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCC
LRALEIPCSPHTGISIEALELAARNEPRLKAVVVVPHLQMPQGSVMPDSHKERLVALCVE
CEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
HGLALIEDDIYREFVESPQPMRPAKAWDRPGDAGQVIYCASLSKSFAPGLRQGWMSAGRW
HCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCHHHCCHHHHHHHCCCCH
NARVQMLKFARTRNMQTWSQLLAARTVGSPAYERHLRRMRASLKEQREQSARAVARYFPA
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTRLSLPPGGISLWLELPAGLSSTRLYDDALARGIRVAPGPMFSNTGRYERFLRLSCGMP
CCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
FTPAVEEGYRVLGELLAGQRNTVPETGRPPQQGGGRRAAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDSVAEFPLSPAARAADQPRYRQIAGLYVQAIAAGSLQPGMRLPSVRELCQRHGVSLTT
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHH
ALQVLRHLEAEGFAQARERVGYFAAVPARVASLPAAREPELHEPLPPDPHVFAGINERIS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHH
TFLEKARRAPSALDLGSAMPAPALFDAEALNRLAVRLLREQPDILVYGPSAPSTHPEFQR
HHHHHHHCCCCHHCCCCCCCCCCHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
AMAHHALSFGLSLAPEDIGATHGNSEAVNLALDAVAEPGDVIAVESPTFFGILQAIEVRG
HHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCC
LRALEIPCSPHTGISIEALELAARNEPRLKAVVVVPHLQMPQGSVMPDSHKERLVALCVE
CEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
HGLALIEDDIYREFVESPQPMRPAKAWDRPGDAGQVIYCASLSKSFAPGLRQGWMSAGRW
HCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCHHHCCHHHHHHHCCCCH
NARVQMLKFARTRNMQTWSQLLAARTVGSPAYERHLRRMRASLKEQREQSARAVARYFPA
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTRLSLPPGGISLWLELPAGLSSTRLYDDALARGIRVAPGPMFSNTGRYERFLRLSCGMP
CCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
FTPAVEEGYRVLGELLAGQRNTVPETGRPPQQGGGRRAAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]