Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is gbsB [H]
Identifier: 120612071
GI number: 120612071
Start: 3774106
End: 3775242
Strand: Direct
Name: gbsB [H]
Synonym: Aave_3418
Alternate gene names: 120612071
Gene position: 3774106-3775242 (Clockwise)
Preceding gene: 120612067
Following gene: 120612075
Centisome position: 70.51
GC content: 71.94
Gene sequence:
>1137_bases ATGGCCCTCATCCACTACATCACCCAGATCCAGATCGAATTCGGCGCAGTGCGGCTGCTCGCCCAGGAATGCGTGCGCGC GGGCATCACGCGCCCGCTCGTGGTCACCGATCCCGGCGTCAAGGCCGCCGGCGTGCTGCAGCCTGCGCTGGACGCGCTCG CCGGCCTGCCGGTGGCGGTGTTCGACCAGACGCCCGCCAACCCCACCGAAGCCGCCGTGCGCGCGGCCGTGGAGATCTAC CGCGCCCATGGCTGCGACGGCCTGATCGCCGTCGGCGGCGGCTCGGCCATCGACTGCGCCAAGGGCATCGCCATCGCCGC CACGCACGACGGGCCGCTCACGCACTACGCGACCATCGAAGGCGGCTCGCCCCGGATCACGGAGCGGGTGGCGCCCCTGA TCGCCGTGCCCACCACGGCAGGCACGGGCAGCGAGGTGGCGCGCGGCGCCATCCTGATCGTGGACGACCACCGCAAGCTC GGCTTCCACTCCTGGCACCTGGTGCCCAAGGCCGCCATCTGCGACCCGGCCCTGACACTGGGCCTGCCGCCCCACCTGAC CGCCGCCACCGGCATGGACGCGATCGCGCACTGCATGGAAACCTTCATGTCCTCCGCCTTCAACCCGCCGGCCGACGGCA TCGCGCTCGACGGCCTGGCCCGCGGCTGGGCCCACATCGAGCGCGCCACGCGCGACGGGCAGGACCGCGACGCACGGCTG CACATGATGAGCGCGAGCATGCAGGGCGCCATGGCCTTCCAGAAGGGCCTGGGCTGCGTGCATTCGCTCAGCCACAGCCT GGGCGGCATCAACCCGCGCCTGCACCACGGCACCCTGAATGCGGTCTTCCTGCCCGCGGTGGTGCGCTTCAATGCGCAGG ACGAGGCCGTGCGCCGCGACCGCCGGCTGGAGCGCATGGCCCAGGCCATGGGCCTGGCCAGCGCGGACGACATTCCCGAT GCGATCCGCGACATGAGCGCGCGCCTGGGACTGCCGACCGGGCTGGCCGCGATGGGGGTCGGAGAAGATGTGTGGGACGG CGTGATCCGCGGCGCCATGGCCGACCACTGCCACAAGACCAATCCGCGCGAGGCCAGCGTGGACGACTACCGGGCCATGC TGGAAGCGTCGATGTAG
Upstream 100 bases:
>100_bases GGGTTTGCTGCAGGGCCATGGAAAGCTCCGGGGTTGTAGATTGGCGTGATCAGACCACCAATACGCCAGGGCGCGCATCC TGGCAACCCCCATCACCACC
Downstream 100 bases:
>100_bases CCGAAGCAGTCCTGGTGGAACCCGGCCTACAGCGGCTCCACGGCATCCGGGGGACAGCCCCGGGCGAGCCATTGCGCGAA CTCGTCGGCCAGCTGGCGGC
Product: iron-containing alcohol dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MALIHYITQIQIEFGAVRLLAQECVRAGITRPLVVTDPGVKAAGVLQPALDALAGLPVAVFDQTPANPTEAAVRAAVEIY RAHGCDGLIAVGGGSAIDCAKGIAIAATHDGPLTHYATIEGGSPRITERVAPLIAVPTTAGTGSEVARGAILIVDDHRKL GFHSWHLVPKAAICDPALTLGLPPHLTAATGMDAIAHCMETFMSSAFNPPADGIALDGLARGWAHIERATRDGQDRDARL HMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAVFLPAVVRFNAQDEAVRRDRRLERMAQAMGLASADDIPD AIRDMSARLGLPTGLAAMGVGEDVWDGVIRGAMADHCHKTNPREASVDDYRAMLEASM
Sequences:
>Translated_378_residues MALIHYITQIQIEFGAVRLLAQECVRAGITRPLVVTDPGVKAAGVLQPALDALAGLPVAVFDQTPANPTEAAVRAAVEIY RAHGCDGLIAVGGGSAIDCAKGIAIAATHDGPLTHYATIEGGSPRITERVAPLIAVPTTAGTGSEVARGAILIVDDHRKL GFHSWHLVPKAAICDPALTLGLPPHLTAATGMDAIAHCMETFMSSAFNPPADGIALDGLARGWAHIERATRDGQDRDARL HMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAVFLPAVVRFNAQDEAVRRDRRLERMAQAMGLASADDIPD AIRDMSARLGLPTGLAAMGVGEDVWDGVIRGAMADHCHKTNPREASVDDYRAMLEASM >Mature_377_residues ALIHYITQIQIEFGAVRLLAQECVRAGITRPLVVTDPGVKAAGVLQPALDALAGLPVAVFDQTPANPTEAAVRAAVEIYR AHGCDGLIAVGGGSAIDCAKGIAIAATHDGPLTHYATIEGGSPRITERVAPLIAVPTTAGTGSEVARGAILIVDDHRKLG FHSWHLVPKAAICDPALTLGLPPHLTAATGMDAIAHCMETFMSSAFNPPADGIALDGLARGWAHIERATRDGQDRDARLH MMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAVFLPAVVRFNAQDEAVRRDRRLERMAQAMGLASADDIPDA IRDMSARLGLPTGLAAMGVGEDVWDGVIRGAMADHCHKTNPREASVDDYRAMLEASM
Specific function: Essential for the utilization of choline as a precursor [H]
COG id: COG1454
COG function: function code C; Alcohol dehydrogenase, class IV
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI133922590, Length=416, Percent_Identity=27.6442307692308, Blast_Score=114, Evalue=2e-25, Organism=Escherichia coli, GI48994951, Length=366, Percent_Identity=36.0655737704918, Blast_Score=194, Evalue=9e-51, Organism=Escherichia coli, GI87082107, Length=373, Percent_Identity=32.4396782841823, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1789163, Length=365, Percent_Identity=32.6027397260274, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1787493, Length=405, Percent_Identity=29.6296296296296, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789386, Length=318, Percent_Identity=31.4465408805031, Blast_Score=107, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17537053, Length=363, Percent_Identity=28.099173553719, Blast_Score=103, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6321181, Length=369, Percent_Identity=35.230352303523, Blast_Score=200, Evalue=2e-52, Organism=Drosophila melanogaster, GI24657991, Length=396, Percent_Identity=28.2828282828283, Blast_Score=104, Evalue=9e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: =1.1.1.1 [H]
Molecular weight: Translated: 39725; Mature: 39594
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00913 ADH_IRON_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIHYITQIQIEFGAVRLLAQECVRAGITRPLVVTDPGVKAAGVLQPALDALAGLPVAV CHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEE FDQTPANPTEAAVRAAVEIYRAHGCDGLIAVGGGSAIDCAKGIAIAATHDGPLTHYATIE ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCEEEEEECCCCCEEEEEEC GGSPRITERVAPLIAVPTTAGTGSEVARGAILIVDDHRKLGFHSWHLVPKAAICDPALTL CCCCHHHHHHCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCEECCCCHHHCCCHHHC GLPPHLTAATGMDAIAHCMETFMSSAFNPPADGIALDGLARGWAHIERATRDGQDRDARL CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHH HMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAVFLPAVVRFNAQDEAVRRD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHH RRLERMAQAMGLASADDIPDAIRDMSARLGLPTGLAAMGVGEDVWDGVIRGAMADHCHKT HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCC NPREASVDDYRAMLEASM CCCCCCHHHHHHHHHHCC >Mature Secondary Structure ALIHYITQIQIEFGAVRLLAQECVRAGITRPLVVTDPGVKAAGVLQPALDALAGLPVAV HHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEE FDQTPANPTEAAVRAAVEIYRAHGCDGLIAVGGGSAIDCAKGIAIAATHDGPLTHYATIE ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCEEEEEECCCCCEEEEEEC GGSPRITERVAPLIAVPTTAGTGSEVARGAILIVDDHRKLGFHSWHLVPKAAICDPALTL CCCCHHHHHHCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCEECCCCHHHCCCHHHC GLPPHLTAATGMDAIAHCMETFMSSAFNPPADGIALDGLARGWAHIERATRDGQDRDARL CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHH HMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAVFLPAVVRFNAQDEAVRRD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHH RRLERMAQAMGLASADDIPDAIRDMSARLGLPTGLAAMGVGEDVWDGVIRGAMADHCHKT HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCC NPREASVDDYRAMLEASM CCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8752328; 9384377 [H]