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The map label for this gene is ygfZ [C]

Identifier: 120612067

GI number: 120612067

Start: 3770041

End: 3770955

Strand: Direct

Name: ygfZ [C]

Synonym: Aave_3414

Alternate gene names: 120612067

Gene position: 3770041-3770955 (Clockwise)

Preceding gene: 120612060

Following gene: 120612071

Centisome position: 70.43

GC content: 73.11

Gene sequence:

>915_bases
ATGACGTCCCCCCTGAATGGCCTGGCCCCCCTCAACGGGCTCGGCGTGATCCGCGTGCAAGGAGAAGACGCCGCGCAATT
CCTCCACGGCCAGCTCACGCAGGACTTTCTGCTGCTGCCGCCCGGGCAGGCGCGGCTGGCGGCCTTCCTCTCGGCCAAGG
GCCGCATGCAGGCCAGCTTCATCGGCTGGCGCGTGGGCGATGCCGAGGTCCTGCTGGTCTGCAGCCGCGACGTGCTCGCC
CCGGTGCTCAAGCGCCTGTCGATGTTCGTGCTGCGCGCCAAGGCACGGCTCACCGATGCCACGGCCGACTTCGCGCTCTG
GGGCCTGGCCGGCGATGCCGTCGCCGCGGTGGCGGGCGAGGCCCTGCCGCCCTGGAGCCGGCAGGACACCCCCCAGGGCA
CCGTGGTGCACCTCTATCCCGGCGCCGGGCAGGCGCGCGCCCTGCTGGCGCAACCCACGGGCCAGCCTGCCCCGTCCGGC
CCGGCCCTGGCGCCCGGCCTCTGGGAGTGGGGCGAAGTGCAGAGTGGCGTGGCCACGCTGACGGCGCCGCTGGTCGAATT
GTTCGTGCCGCAGATGCTCAACTACGAATCGGTGGGCGGCGTGAATTTCAAGAAGGGCTGCTACCCCGGCCAGGAGGTGG
TGGCGCGCAGCCAGTTCCGCGGCACGCTCAAGCGCCGCACCTACCTGGCGCATGCCCCCGAGGCGATCACTGTGGGCGCC
GAGGTGTTCGCCGCCAGCGATGCCGAGCAGCCCTGCGGCACGGTGGTCCAGGCCGCCGCGGCACCGGGCGGCGGCTTCGA
TGCGCTGGTGGCCCTGCAGGTGGCCTCCACCGGCGAGGCGCTGCGCGTGGGCGGCCCGGAAGGCGTGCCCCTCGCCCTGG
GCGACCTGCCCTACGCGCTGCTCGACGATATTTGA

Upstream 100 bases:

>100_bases
AGGCCGGCCGCCGCGAAGGCCACCAGTACGATGAAAAGGAAGAAACGGCGCACGGACCGGAATGCAGAGAGGGGAAAGAG
CCGGGCATGATAATTCACCC

Downstream 100 bases:

>100_bases
CGCTGCCCTGATCTTCCGGCTGCCTGAGCGGGCGCCTTGCGAAAGATGTCCGATACCGCAACGGCCTTTCCCGTCAGAGG
GCCGCGGAGCGGGCCACGCC

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTSPLNGLAPLNGLGVIRVQGEDAAQFLHGQLTQDFLLLPPGQARLAAFLSAKGRMQASFIGWRVGDAEVLLVCSRDVLA
PVLKRLSMFVLRAKARLTDATADFALWGLAGDAVAAVAGEALPPWSRQDTPQGTVVHLYPGAGQARALLAQPTGQPAPSG
PALAPGLWEWGEVQSGVATLTAPLVELFVPQMLNYESVGGVNFKKGCYPGQEVVARSQFRGTLKRRTYLAHAPEAITVGA
EVFAASDAEQPCGTVVQAAAAPGGGFDALVALQVASTGEALRVGGPEGVPLALGDLPYALLDDI

Sequences:

>Translated_304_residues
MTSPLNGLAPLNGLGVIRVQGEDAAQFLHGQLTQDFLLLPPGQARLAAFLSAKGRMQASFIGWRVGDAEVLLVCSRDVLA
PVLKRLSMFVLRAKARLTDATADFALWGLAGDAVAAVAGEALPPWSRQDTPQGTVVHLYPGAGQARALLAQPTGQPAPSG
PALAPGLWEWGEVQSGVATLTAPLVELFVPQMLNYESVGGVNFKKGCYPGQEVVARSQFRGTLKRRTYLAHAPEAITVGA
EVFAASDAEQPCGTVVQAAAAPGGGFDALVALQVASTGEALRVGGPEGVPLALGDLPYALLDDI
>Mature_303_residues
TSPLNGLAPLNGLGVIRVQGEDAAQFLHGQLTQDFLLLPPGQARLAAFLSAKGRMQASFIGWRVGDAEVLLVCSRDVLAP
VLKRLSMFVLRAKARLTDATADFALWGLAGDAVAAVAGEALPPWSRQDTPQGTVVHLYPGAGQARALLAQPTGQPAPSGP
ALAPGLWEWGEVQSGVATLTAPLVELFVPQMLNYESVGGVNFKKGCYPGQEVVARSQFRGTLKRRTYLAHAPEAITVGAE
VFAASDAEQPCGTVVQAAAAPGGGFDALVALQVASTGEALRVGGPEGVPLALGDLPYALLDDI

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435 [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=232, Percent_Identity=29.7413793103448, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 31537; Mature: 31405

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPLNGLAPLNGLGVIRVQGEDAAQFLHGQLTQDFLLLPPGQARLAAFLSAKGRMQASF
CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEE
IGWRVGDAEVLLVCSRDVLAPVLKRLSMFVLRAKARLTDATADFALWGLAGDAVAAVAGE
EEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCHHHHHHHCC
ALPPWSRQDTPQGTVVHLYPGAGQARALLAQPTGQPAPSGPALAPGLWEWGEVQSGVATL
CCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCHHHH
TAPLVELFVPQMLNYESVGGVNFKKGCYPGQEVVARSQFRGTLKRRTYLAHAPEAITVGA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECH
EVFAASDAEQPCGTVVQAAAAPGGGFDALVALQVASTGEALRVGGPEGVPLALGDLPYAL
HHEECCCCCCCHHHHHHHHCCCCCCHHHEEEEEECCCCCEEEECCCCCCEEEECCCCHHH
LDDI
HCCC
>Mature Secondary Structure 
TSPLNGLAPLNGLGVIRVQGEDAAQFLHGQLTQDFLLLPPGQARLAAFLSAKGRMQASF
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEE
IGWRVGDAEVLLVCSRDVLAPVLKRLSMFVLRAKARLTDATADFALWGLAGDAVAAVAGE
EEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCHHHHHHHCC
ALPPWSRQDTPQGTVVHLYPGAGQARALLAQPTGQPAPSGPALAPGLWEWGEVQSGVATL
CCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCHHHH
TAPLVELFVPQMLNYESVGGVNFKKGCYPGQEVVARSQFRGTLKRRTYLAHAPEAITVGA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECH
EVFAASDAEQPCGTVVQAAAAPGGGFDALVALQVASTGEALRVGGPEGVPLALGDLPYAL
HHEECCCCCCCHHHHHHHHCCCCCCHHHEEEEEECCCCCEEEECCCCCCEEEECCCCHHH
LDDI
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]