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The map label for this gene is tolB [H]

Identifier: 120612059

GI number: 120612059

Start: 3761920

End: 3763236

Strand: Reverse

Name: tolB [H]

Synonym: Aave_3406

Alternate gene names: 120612059

Gene position: 3763236-3761920 (Counterclockwise)

Preceding gene: 120612061

Following gene: 120612058

Centisome position: 70.3

GC content: 69.1

Gene sequence:

>1317_bases
ATGACTTCAGACCGCCCATCCCATCCTCTCGCCGCGGCCCTGCCGCACGCCACGCGCCGCCACGCCATCGTGGCCCTCGC
CTCCGCAGCCTCCTTTCCCGCCTTCGCGCAGTTCCGCGTCGAGATCACCGGCGTGGGCCTGACCCAGTTGCCGACGGCCA
TCGCGCCGTTCCGCGGCGAGGCGGGTGCACCGCAGAAGATCTCCGCCATCGTGCAGGCCGACCTGGAGCGCAGCGGCCAG
TTCCGTGCCGTGGACGCCTCCGGCCCGCAACTGGACGAAAACTCCCGCCCCGACGTGGCCCTCTGGAAGCAGAAGGGCGC
CGATTCGCTCACCACCGGCAGCATCACGCGCCTGCCGGACGGCCGCTACGACGTGCGCTTCCGCCTCTGGGAGACGGTGC
GCGGCGAGGACAAGGGCGGCCAGAGCTTCGTGGTCACGCAGGCCGACCTGCGGCTCGTCGCCCACCGCATCGCCGACTAC
GTGTACGAGAAGCTCACCGGCCAGCGCGGCATCTTCTCGACCCGCATCGCCTACGTCACCAAGGCCGGCAGCCGCTACAG
CCTCTGGGTGGCGGACGCCGACGGCGAGAACGCCCAGTCGGCGCTCTCCAGCCCCGAGCCCATCATCTCGCCGGCCTGGT
CGCCCTCCGGAACGCAGCTTGCCTACGTGTCGTTCGAGTCGCGCAAGCCCGTGGTGTACGTGCACGACGTCTCGACCGGC
CGTCGCCGCCTGATCGCCAACTTCCGCGGCTCCAACAGCGCGCCCGCCTGGTCGCCGGACGGCCGCACGCTCGCCGTCAC
CCTCAGCCGCGACGGCAGCTCGCAGCTCTACACGATCGACGCCAACGGCGGCGAGCCCCGCCGGCTCATGCAGAGTTCGG
GCATCGACACCGAGCCCACCTATTCCAGCGACGGCCGCAGCATCTACTTCGTGAGCGATCGCGGCGGCGCCCCGCAGATC
TACCGCGTGCCCGCCACGGGGGGAAGCGCCGAGCGCGTCACCTTCACGGGCACCTACAACATTTCTCCGAGCATCAGCCC
CGATGGCAAGTGGTTGGCCTACATCTCCCGTGTGGGAGGGGCTTTCAAACTCCACGTCATGGATCTGACGTCCGGCAGCG
TGACCGCCATCACCGACACCACCGCCGATGAGAGCCCGAGCTTCGCGCCCAATGGCAGACTCATCGTCTATGCGACCCAG
CAGCAGGGCCGCGAAGCGCTGATGACCACCACGCTGGACGGCAAGATCAAGGCCCGTCTGGCGGGGCAGAATGGCGATAT
CCGGGAGCCGGACTGGGGTCCGTTCCAGAAACAATAA

Upstream 100 bases:

>100_bases
TTGCACAGTTTGTCACAGGGCTGTCCGCCCTGTGTGTAACATTCGGCCCCTGACCTTCCGGTTTCCCTCCGGCGAATGGT
CCGGTATCCCAACGCTGTCA

Downstream 100 bases:

>100_bases
TTTGAATCTTTTTCGTTTTTCAGACTCGACAGTAACGCTTTATCCGGACTAGGAGAACCATCCCAATGATCAACCTTCCC
TTCAAACGCATTTCCCTGGC

Product: translocation protein TolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MTSDRPSHPLAAALPHATRRHAIVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGEAGAPQKISAIVQADLERSGQ
FRAVDASGPQLDENSRPDVALWKQKGADSLTTGSITRLPDGRYDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADY
VYEKLTGQRGIFSTRIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTG
RRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRSIYFVSDRGGAPQI
YRVPATGGSAERVTFTGTYNISPSISPDGKWLAYISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQ
QQGREALMTTTLDGKIKARLAGQNGDIREPDWGPFQKQ

Sequences:

>Translated_438_residues
MTSDRPSHPLAAALPHATRRHAIVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGEAGAPQKISAIVQADLERSGQ
FRAVDASGPQLDENSRPDVALWKQKGADSLTTGSITRLPDGRYDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADY
VYEKLTGQRGIFSTRIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTG
RRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRSIYFVSDRGGAPQI
YRVPATGGSAERVTFTGTYNISPSISPDGKWLAYISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQ
QQGREALMTTTLDGKIKARLAGQNGDIREPDWGPFQKQ
>Mature_437_residues
TSDRPSHPLAAALPHATRRHAIVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGEAGAPQKISAIVQADLERSGQF
RAVDASGPQLDENSRPDVALWKQKGADSLTTGSITRLPDGRYDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADYV
YEKLTGQRGIFSTRIAYVTKAGSRYSLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTGR
RRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRSIYFVSDRGGAPQIY
RVPATGGSAERVTFTGTYNISPSISPDGKWLAYISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQQ
QGREALMTTTLDGKIKARLAGQNGDIREPDWGPFQKQ

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

Organism=Escherichia coli, GI1786961, Length=394, Percent_Identity=38.3248730964467, Blast_Score=275, Evalue=4e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 47215; Mature: 47084

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDRPSHPLAAALPHATRRHAIVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGE
CCCCCCCCCHHHHCCCCHHCEEEEEEECCCCCCCEEEEEEEEEECCHHHCCHHHCCCCCC
AGAPQKISAIVQADLERSGQFRAVDASGPQLDENSRPDVALWKQKGADSLTTGSITRLPD
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCC
GRYDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADYVYEKLTGQRGIFSTRIAYVT
CCEEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
KAGSRYSLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTG
ECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
RRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPT
CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCC
YSSDGRSIYFVSDRGGAPQIYRVPATGGSAERVTFTGTYNISPSISPDGKWLAYISRVGG
CCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC
AFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQQQGREALMTTTLDGKIKARL
EEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEE
AGQNGDIREPDWGPFQKQ
ECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSDRPSHPLAAALPHATRRHAIVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGE
CCCCCCCCHHHHCCCCHHCEEEEEEECCCCCCCEEEEEEEEEECCHHHCCHHHCCCCCC
AGAPQKISAIVQADLERSGQFRAVDASGPQLDENSRPDVALWKQKGADSLTTGSITRLPD
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCC
GRYDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADYVYEKLTGQRGIFSTRIAYVT
CCEEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
KAGSRYSLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVSFESRKPVVYVHDVSTG
ECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
RRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPT
CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCC
YSSDGRSIYFVSDRGGAPQIYRVPATGGSAERVTFTGTYNISPSISPDGKWLAYISRVGG
CCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC
AFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQQQGREALMTTTLDGKIKARL
EEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEE
AGQNGDIREPDWGPFQKQ
ECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA