BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is yahD [C]

Identifier: 120612061

GI number: 120612061

Start: 3765200

End: 3765895

Strand: Reverse

Name: yahD [C]

Synonym: Aave_3408

Alternate gene names: 120612061

Gene position: 3765895-3765200 (Counterclockwise)

Preceding gene: 120612062

Following gene: 120612059

Centisome position: 70.35

GC content: 70.69

Gene sequence:

>696_bases
ATGACGCAGCTTCGCCCCCTGTCGCGGCGCCTGTTCGTCTCCGCCGCGGCGCTGGCCGGCGCGGGCCTGTGCGCTGCCTG
CGCGCACGCCGGCGCCTATGACGATTTCTTCACCGCCATCGTGCGCGACCAGGGCGACGACATCACCGCGCTCGTGCGGC
GCGGGTTCGATCCCAACACGCGCAACCCCAAGGGCGACGTCGGCCTCACGCTGGCCCTGCAGCAGGGCTCGATGAAAGCG
TTCGACGCGCTCATGGCCGCGCCCGGCATCAAGGTGGAAACGCGCAACTCCAAGGACGAGAGCCCGCTCATGATCGCCTG
CCTGCGCGGGCAGGTCGCCGCGGTCCGCGCGCTCATCGCCAAGGATGGCGACGTCAACAAGACCGGCTGGACCCCGCTGC
ACTACGCCGCTTCCGGCACCACCGACCAGCAGCTGGAAATCACCCGCCTGCTCATCGACCAGAGCGCCTACATCGACGCC
GAGTCTCCCAACGGCACCACGCCGCTCATGATGGCCGTGAGCTATGGCCGGGCCGACGTGGCGCGCTTCCTGGTGGAGCA
GGGCGCGGACCCCACCATCAAGAACCAGCTCGGCCTCACCGCCGCGGACTTCGCCCGGCGCGCGGCGCGCCAGGACATGG
TGGACCTCGTCGCGGAGGCCATCCGCCGCCGCCAGCCCAACCGCGGCAAATGGTGA

Upstream 100 bases:

>100_bases
TGGCGCAGCAGATCGCGGCGCTCCGGGGCATGCAGGCTGAAGCCGTGGGCGAGGCCACGAGCCGGAATTTCGACACGCTC
TTTTTCTGAAAGGATGCTCC

Downstream 100 bases:

>100_bases
CCGGGTAGCGGGTAGCGGCCGTCCCTCAGCCGCCCGCGAGGGCGGAGCCCTTCAGGCGCGCATACAGGCCGCCGCGCGCC
TGCAGTTCGGCATCCGTGCC

Product: ankyrin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTQLRPLSRRLFVSAAALAGAGLCAACAHAGAYDDFFTAIVRDQGDDITALVRRGFDPNTRNPKGDVGLTLALQQGSMKA
FDALMAAPGIKVETRNSKDESPLMIACLRGQVAAVRALIAKDGDVNKTGWTPLHYAASGTTDQQLEITRLLIDQSAYIDA
ESPNGTTPLMMAVSYGRADVARFLVEQGADPTIKNQLGLTAADFARRAARQDMVDLVAEAIRRRQPNRGKW

Sequences:

>Translated_231_residues
MTQLRPLSRRLFVSAAALAGAGLCAACAHAGAYDDFFTAIVRDQGDDITALVRRGFDPNTRNPKGDVGLTLALQQGSMKA
FDALMAAPGIKVETRNSKDESPLMIACLRGQVAAVRALIAKDGDVNKTGWTPLHYAASGTTDQQLEITRLLIDQSAYIDA
ESPNGTTPLMMAVSYGRADVARFLVEQGADPTIKNQLGLTAADFARRAARQDMVDLVAEAIRRRQPNRGKW
>Mature_230_residues
TQLRPLSRRLFVSAAALAGAGLCAACAHAGAYDDFFTAIVRDQGDDITALVRRGFDPNTRNPKGDVGLTLALQQGSMKAF
DALMAAPGIKVETRNSKDESPLMIACLRGQVAAVRALIAKDGDVNKTGWTPLHYAASGTTDQQLEITRLLIDQSAYIDAE
SPNGTTPLMMAVSYGRADVARFLVEQGADPTIKNQLGLTAADFARRAARQDMVDLVAEAIRRRQPNRGKW

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI38569428, Length=146, Percent_Identity=35.6164383561644, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI38569426, Length=146, Percent_Identity=35.6164383561644, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI148596917, Length=186, Percent_Identity=31.1827956989247, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI46519154, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46519151, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI32967601, Length=175, Percent_Identity=28, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI38683807, Length=202, Percent_Identity=33.6633663366337, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI46519147, Length=178, Percent_Identity=34.2696629213483, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI37620163, Length=178, Percent_Identity=34.2696629213483, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI38683816, Length=202, Percent_Identity=33.6633663366337, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI70780357, Length=159, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI215598574, Length=159, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI70780353, Length=159, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI256574792, Length=124, Percent_Identity=35.4838709677419, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI30425444, Length=152, Percent_Identity=32.2368421052632, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI187608777, Length=118, Percent_Identity=36.4406779661017, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI62988328, Length=179, Percent_Identity=25.6983240223464, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI268607595, Length=179, Percent_Identity=25.6983240223464, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI87239981, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI70780355, Length=181, Percent_Identity=32.0441988950276, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI134948605, Length=119, Percent_Identity=34.453781512605, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI134948558, Length=119, Percent_Identity=34.453781512605, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI70780359, Length=181, Percent_Identity=32.0441988950276, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI188595682, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI18252778, Length=160, Percent_Identity=27.5, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI52426737, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI13376842, Length=168, Percent_Identity=29.7619047619048, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI24233530, Length=173, Percent_Identity=27.1676300578035, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI52426735, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI157739945, Length=142, Percent_Identity=32.3943661971831, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI41327754, Length=181, Percent_Identity=29.8342541436464, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71981411, Length=193, Percent_Identity=28.4974093264249, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322079, Length=113, Percent_Identity=38.9380530973451, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571867, Length=160, Percent_Identity=33.125, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571865, Length=160, Percent_Identity=33.125, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281359521, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359519, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558752, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558750, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558756, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558754, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45553307, Length=163, Percent_Identity=31.9018404907975, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644921, Length=163, Percent_Identity=31.9018404907975, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644919, Length=163, Percent_Identity=31.9018404907975, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082110, Length=180, Percent_Identity=28.8888888888889, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082085, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082099, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161082096, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161082081, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581260, Length=146, Percent_Identity=31.5068493150685, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581258, Length=146, Percent_Identity=31.5068493150685, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161082106, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161082089, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221472807, Length=169, Percent_Identity=28.9940828402367, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17998549, Length=169, Percent_Identity=28.9940828402367, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552223, Length=169, Percent_Identity=28.9940828402367, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 24861; Mature: 24729

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLRPLSRRLFVSAAALAGAGLCAACAHAGAYDDFFTAIVRDQGDDITALVRRGFDPNT
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCC
RNPKGDVGLTLALQQGSMKAFDALMAAPGIKVETRNSKDESPLMIACLRGQVAAVRALIA
CCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHCHHHHHHHHHH
KDGDVNKTGWTPLHYAASGTTDQQLEITRLLIDQSAYIDAESPNGTTPLMMAVSYGRADV
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCHHHH
ARFLVEQGADPTIKNQLGLTAADFARRAARQDMVDLVAEAIRRRQPNRGKW
HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQLRPLSRRLFVSAAALAGAGLCAACAHAGAYDDFFTAIVRDQGDDITALVRRGFDPNT
CCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCC
RNPKGDVGLTLALQQGSMKAFDALMAAPGIKVETRNSKDESPLMIACLRGQVAAVRALIA
CCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHCHHHHHHHHHH
KDGDVNKTGWTPLHYAASGTTDQQLEITRLLIDQSAYIDAESPNGTTPLMMAVSYGRADV
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCHHHH
ARFLVEQGADPTIKNQLGLTAADFARRAARQDMVDLVAEAIRRRQPNRGKW
HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]