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The map label for this gene is ycaR [C]

Identifier: 120611232

GI number: 120611232

Start: 2815229

End: 2815411

Strand: Reverse

Name: ycaR [C]

Synonym: Aave_2563

Alternate gene names: 120611232

Gene position: 2815411-2815229 (Counterclockwise)

Preceding gene: 120611233

Following gene: 120611231

Centisome position: 52.6

GC content: 67.21

Gene sequence:

>183_bases
ATGGATCCCAAACTGCTCGAACTGCTGGTCTGCCCGGTCACCAAGGGTCCGCTGACCTACGACCGCGAGCGCGACGAACT
GGTGTCGCGCAGTGCCCGCCTCGCCTACCCGGTGCGCGACGGCATCCCGGTGCTCCTGGAAACCGAGGCACGCCCATTGA
CCGACGCGGAGCTCGAAGCGTGA

Upstream 100 bases:

>100_bases
TGCCGCTTTCTTCGACCGGCTGCACGCGCGACTGCAGGCGCTGCCGCGCCGGCGCTCGCTATGATCGGTTTCCCTTTTTT
CTGAACACGCTTGTCACGCC

Downstream 100 bases:

>100_bases
GCGGTGGGGCCGCATCCGCCGGCTTCACCGTATTGATTCCGGCGCGGCTGGCCTCCACCCGCCTGCCCGACAAGCCGCTG
GCGGACATCGGCGGCATCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 60

Protein sequence:

>60_residues
MDPKLLELLVCPVTKGPLTYDRERDELVSRSARLAYPVRDGIPVLLETEARPLTDAELEA

Sequences:

>Translated_60_residues
MDPKLLELLVCPVTKGPLTYDRERDELVSRSARLAYPVRDGIPVLLETEARPLTDAELEA
>Mature_60_residues
MDPKLLELLVCPVTKGPLTYDRERDELVSRSARLAYPVRDGIPVLLETEARPLTDAELEA

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=57, Percent_Identity=57.8947368421053, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2563_ACIAC (A1TQ98)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_970910.1
- ProteinModelPortal:   A1TQ98
- SMR:   A1TQ98
- STRING:   A1TQ98
- GeneID:   4669241
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_2563
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- PhylomeDB:   A1TQ98
- ProtClustDB:   CLSK951690
- BioCyc:   AAVE397945:AAVE_2563-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6736; Mature: 6736

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPKLLELLVCPVTKGPLTYDRERDELVSRSARLAYPVRDGIPVLLETEARPLTDAELEA
CCCHHEEEEECCCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MDPKLLELLVCPVTKGPLTYDRERDELVSRSARLAYPVRDGIPVLLETEARPLTDAELEA
CCCHHEEEEECCCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA