Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is kdsB

Identifier: 120611231

GI number: 120611231

Start: 2814441

End: 2815232

Strand: Reverse

Name: kdsB

Synonym: Aave_2562

Alternate gene names: 120611231

Gene position: 2815232-2814441 (Counterclockwise)

Preceding gene: 120611232

Following gene: 120611230

Centisome position: 52.59

GC content: 74.49

Gene sequence:

>792_bases
GTGAGCGGTGGGGCCGCATCCGCCGGCTTCACCGTATTGATTCCGGCGCGGCTGGCCTCCACCCGCCTGCCCGACAAGCC
GCTGGCGGACATCGGCGGCATCCCCATGGTCGTCCGGGTCGCGCAGCAGGCCGCCCGCAGCCGGGCCGCGCGCGTGGTCG
TGGCCGCCGACCATCCCCGCATCCTGGAAGCCTGCGCCGCGCACGGCGTGCAGGCCGTCGCGACGCGCGCGGACCATCCC
AGCGGCAGCGACCGGCTGGCCGAAGCCTGCGTGCAGCTCGGGCTGGCCGACGACGACGTGGTGGTGAACGTGCAGGGCGA
CGAGCCGCTGATCGCACCGGCCCTCATCGACGCGGTCGCGGCCCTGCTGCCGGCCCGCCCCGAAGCGGACATGGGCACGG
CCGCGCATGCCATCCATGCGCGGGAGGACTTCGCCAATCCCAACGTGGTGAAAGTGGTGCTCGACGCCCGCGGCCTCGCG
CACTACTTCAGCCGGGCACCGATCCCGCATGCGCGCGGCCATGCGGACACGGCGTGGTGGCAAGGCGGGCAGGCAGGCGT
GCCCGCGGGCTGCGCGCCGCTGCGCCACATCGGCATCTACAGCTACCGGGCAGCGTTCGTGCGGGCGTTTGCCGCGCTGC
CGCCGGCCCCCACGGAAGCGCTGGAAGCGCTGGAGCAACTGCGTGCGCTGTGGCACGGACACCGCATCGCCGTGCATGTC
GCGGACGCCGCGCCGGGGCCGGGCGTGGACACGCCGGAAGACCTCGAACGGGTGCGCTCGCTGCTGGGCTGA

Upstream 100 bases:

>100_bases
TGGTGTCGCGCAGTGCCCGCCTCGCCTACCCGGTGCGCGACGGCATCCCGGTGCTCCTGGAAACCGAGGCACGCCCATTG
ACCGACGCGGAGCTCGAAGC

Downstream 100 bases:

>100_bases
AACCGCGCGCCGGACGCCGTCACGATGGTGTCGCGGCTGTCAGGCAGACGGAAGGACCCGCATGCTATCCTTGCCCGCGA
TTGAAGCGCCAACCCGGGCC

Product: 3-deoxy-D-manno-octulosonate cytidylyltransferase

Products: NA

Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase; CKS; CMP-KDO synthase

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHP
SGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLA
HYFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV
ADAAPGPGVDTPEDLERVRSLLG

Sequences:

>Translated_263_residues
MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHP
SGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLA
HYFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV
ADAAPGPGVDTPEDLERVRSLLG
>Mature_262_residues
SGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHPS
GSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAH
YFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHVA
DAAPGPGVDTPEDLERVRSLLG

Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria

COG id: COG1212

COG function: function code M; CMP-2-keto-3-deoxyoctulosonic acid synthetase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsB family

Homologues:

Organism=Escherichia coli, GI1787147, Length=253, Percent_Identity=51.3833992094862, Blast_Score=234, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDSB_ACIAC (A1TQ97)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_970909.1
- ProteinModelPortal:   A1TQ97
- SMR:   A1TQ97
- STRING:   A1TQ97
- GeneID:   4666697
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_2562
- NMPDR:   fig|397945.5.peg.2197
- eggNOG:   COG1212
- HOGENOM:   HBG637773
- OMA:   IIPARLK
- PhylomeDB:   A1TQ97
- ProtClustDB:   CLSK963184
- BioCyc:   AAVE397945:AAVE_2562-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00057
- InterPro:   IPR003329
- InterPro:   IPR004528
- TIGRFAMs:   TIGR00466

Pfam domain/function: PF02348 CTP_transf_3

EC number: =2.7.7.38

Molecular weight: Translated: 27337; Mature: 27206

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPR
CCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCEEEEECCCHH
ILEACAAHGVQAVATRADHPSGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVA
HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
ALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAHYFSRAPIPHARGHADTAWW
HHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHC
QGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE
ADAAPGPGVDTPEDLERVRSLLG
ECCCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
SGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPR
CCCCCCCCEEEEEEHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCEEEEECCCHH
ILEACAAHGVQAVATRADHPSGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVA
HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
ALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAHYFSRAPIPHARGHADTAWW
HHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHC
QGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE
ADAAPGPGVDTPEDLERVRSLLG
ECCCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA