Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is kdsB
Identifier: 120611231
GI number: 120611231
Start: 2814441
End: 2815232
Strand: Reverse
Name: kdsB
Synonym: Aave_2562
Alternate gene names: 120611231
Gene position: 2815232-2814441 (Counterclockwise)
Preceding gene: 120611232
Following gene: 120611230
Centisome position: 52.59
GC content: 74.49
Gene sequence:
>792_bases GTGAGCGGTGGGGCCGCATCCGCCGGCTTCACCGTATTGATTCCGGCGCGGCTGGCCTCCACCCGCCTGCCCGACAAGCC GCTGGCGGACATCGGCGGCATCCCCATGGTCGTCCGGGTCGCGCAGCAGGCCGCCCGCAGCCGGGCCGCGCGCGTGGTCG TGGCCGCCGACCATCCCCGCATCCTGGAAGCCTGCGCCGCGCACGGCGTGCAGGCCGTCGCGACGCGCGCGGACCATCCC AGCGGCAGCGACCGGCTGGCCGAAGCCTGCGTGCAGCTCGGGCTGGCCGACGACGACGTGGTGGTGAACGTGCAGGGCGA CGAGCCGCTGATCGCACCGGCCCTCATCGACGCGGTCGCGGCCCTGCTGCCGGCCCGCCCCGAAGCGGACATGGGCACGG CCGCGCATGCCATCCATGCGCGGGAGGACTTCGCCAATCCCAACGTGGTGAAAGTGGTGCTCGACGCCCGCGGCCTCGCG CACTACTTCAGCCGGGCACCGATCCCGCATGCGCGCGGCCATGCGGACACGGCGTGGTGGCAAGGCGGGCAGGCAGGCGT GCCCGCGGGCTGCGCGCCGCTGCGCCACATCGGCATCTACAGCTACCGGGCAGCGTTCGTGCGGGCGTTTGCCGCGCTGC CGCCGGCCCCCACGGAAGCGCTGGAAGCGCTGGAGCAACTGCGTGCGCTGTGGCACGGACACCGCATCGCCGTGCATGTC GCGGACGCCGCGCCGGGGCCGGGCGTGGACACGCCGGAAGACCTCGAACGGGTGCGCTCGCTGCTGGGCTGA
Upstream 100 bases:
>100_bases TGGTGTCGCGCAGTGCCCGCCTCGCCTACCCGGTGCGCGACGGCATCCCGGTGCTCCTGGAAACCGAGGCACGCCCATTG ACCGACGCGGAGCTCGAAGC
Downstream 100 bases:
>100_bases AACCGCGCGCCGGACGCCGTCACGATGGTGTCGCGGCTGTCAGGCAGACGGAAGGACCCGCATGCTATCCTTGCCCGCGA TTGAAGCGCCAACCCGGGCC
Product: 3-deoxy-D-manno-octulosonate cytidylyltransferase
Products: NA
Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase; CKS; CMP-KDO synthase
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHP SGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLA HYFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV ADAAPGPGVDTPEDLERVRSLLG
Sequences:
>Translated_263_residues MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHP SGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLA HYFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV ADAAPGPGVDTPEDLERVRSLLG >Mature_262_residues SGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPRILEACAAHGVQAVATRADHPS GSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVAALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAH YFSRAPIPHARGHADTAWWQGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHVA DAAPGPGVDTPEDLERVRSLLG
Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
COG id: COG1212
COG function: function code M; CMP-2-keto-3-deoxyoctulosonic acid synthetase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kdsB family
Homologues:
Organism=Escherichia coli, GI1787147, Length=253, Percent_Identity=51.3833992094862, Blast_Score=234, Evalue=3e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KDSB_ACIAC (A1TQ97)
Other databases:
- EMBL: CP000512 - RefSeq: YP_970909.1 - ProteinModelPortal: A1TQ97 - SMR: A1TQ97 - STRING: A1TQ97 - GeneID: 4666697 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_2562 - NMPDR: fig|397945.5.peg.2197 - eggNOG: COG1212 - HOGENOM: HBG637773 - OMA: IIPARLK - PhylomeDB: A1TQ97 - ProtClustDB: CLSK963184 - BioCyc: AAVE397945:AAVE_2562-MONOMER - GO: GO:0005737 - HAMAP: MF_00057 - InterPro: IPR003329 - InterPro: IPR004528 - TIGRFAMs: TIGR00466
Pfam domain/function: PF02348 CTP_transf_3
EC number: =2.7.7.38
Molecular weight: Translated: 27337; Mature: 27206
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPR CCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCEEEEECCCHH ILEACAAHGVQAVATRADHPSGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVA HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH ALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAHYFSRAPIPHARGHADTAWW HHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHC QGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE ADAAPGPGVDTPEDLERVRSLLG ECCCCCCCCCCHHHHHHHHHHHC >Mature Secondary Structure SGGAASAGFTVLIPARLASTRLPDKPLADIGGIPMVVRVAQQAARSRAARVVVAADHPR CCCCCCCCEEEEEEHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCEEEEECCCHH ILEACAAHGVQAVATRADHPSGSDRLAEACVQLGLADDDVVVNVQGDEPLIAPALIDAVA HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH ALLPARPEADMGTAAHAIHAREDFANPNVVKVVLDARGLAHYFSRAPIPHARGHADTAWW HHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHC QGGQAGVPAGCAPLRHIGIYSYRAAFVRAFAALPPAPTEALEALEQLRALWHGHRIAVHV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE ADAAPGPGVDTPEDLERVRSLLG ECCCCCCCCCCHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA