Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yhjE [H]
Identifier: 120610898
GI number: 120610898
Start: 2445306
End: 2446640
Strand: Direct
Name: yhjE [H]
Synonym: Aave_2224
Alternate gene names: 120610898
Gene position: 2445306-2446640 (Clockwise)
Preceding gene: 120610890
Following gene: 120610913
Centisome position: 45.68
GC content: 67.87
Gene sequence:
>1335_bases ATGAGTGGGCTTGCTGCTTCCGCCTATCCCTCCGGGAGTTTCCATCACGAGGAATCCCTGTCCCATGCGGACACCCATGA AGAAGCCACGCCCAGCGAGATCGCGGTCGGCGTGATCATCGGGCGTTCGTCCGAGTATTTCGACTTCTTCGTCTTCGGCA TCGCCTGCGTGCTGGTGTTCCCGTCGTTCGTCTTTCCCTTCATGACGCGCCTGGACGGCACGCTGATGGCCTTCGCGATC TTCGCGCTCGCCTTCGTCGCCCGTCCCGTGGGGACCGCCATCTCGATGGCGGTGCAGCGGCGCTGGGGGCGCGGCACCAA GCTGACGCTCGCCCTGTTCCTGCTGGGCGCCTCCACGGCGGGCATGGCGTTCCTGCCGAGCTACAACAGCGTGGGCCACA TCGCCATCATCGCCCTGGTCGTGCTGCGCCTGGGCCAGGGGGTGGCGCTGGGCGGTACCTGGGACGGCCTTCCCTCGCTG CTGGCCATGTCCGCCCCGCCGGAGCGGCGTGGCTGGTACGCCATGATCGGGCAACTGGGCGCGCCGGTCGGCTTCGCGCT CGCGGCCAGCCTGTTCGCCTATCTCTACTCCAACCTGTCGGTGCAGGAGTTCCTCGACTGGGGCTGGCGCTTTCCGTTCT TCGTCGCCTTCGCGATCAACGTGGTGGCGCTTTTCGCCCGCCTGCGCCTGATCGTCGGCCAGTCCTATACCGAGATGATG CAGCAGCGCGAGCTGGAGCCCGTGGGTGCGCTGGAACTCATGCGCAGCGAAGGCCGCAACGTGGTGCTGGGCGCCTTCGC CGCGCTGGCGAGCTTCGCGCTCTTCCACGTGGTCACGGTGTTCCCGCTGTCGTGGATCTCGATGTATTCCGAGCAGTCGA TCACCCACGTGCTGGGCGTGCAGATCGCCGGTGCCTTCTGCGCGGCCGTCGCCATCGCCATCTCCGGCCGCCTGGCCGAC CGGGTGGGCCGCCGCAACACGCTGGGCGCCATGGCCTGCCTGATCGGGGTGTTCAGCCTGGTCACGCCGTGGCTGCTCAG CAGCGGCACGGTAGGCAACAACATCTTCATCCTGGTGGGCTTCGTGCTGCTGGGCCTGTCGTACGGTCAGGCTTCCGGCA CGGTGACGGCCAATTTCTCGCCGCGCTTCCGCTACACGGGGGCCGCGCTGTCGGCCGATCTCGCCTGGCTGGTCGGCGCC GCGTTCGCGCCGCTGGTCGCCCTGGGCCTTTCGGCCAAGTTCGGGCTGATCGCTGTGAGCGTGTACCTGCTGTCCGGCGT GGTCTGCACGCTGCTGGCGCTGCGGATCAACCGCCTGATCGAGCGCCGCGAATGA
Upstream 100 bases:
>100_bases GGGTTTGTCCGACCCCTCCTAGGGGAAAAGGCGCCTTGTGGGGGCCACGGACGGGGTGTAGAACGGAAGCCGTGTTCAGC ATGAATCGAGGAGCGTTCAT
Downstream 100 bases:
>100_bases CCGGGGAATGACGAGGACGGCGCGCCGCAGGGCGCGCCGGCAGCGCGAGGAGAAGCGCGAAAGAACAAAGCCCGCGTCCT GCGGGCTTTGTTCTTTGGGT
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 444; Mature: 443
Protein sequence:
>444_residues MSGLAASAYPSGSFHHEESLSHADTHEEATPSEIAVGVIIGRSSEYFDFFVFGIACVLVFPSFVFPFMTRLDGTLMAFAI FALAFVARPVGTAISMAVQRRWGRGTKLTLALFLLGASTAGMAFLPSYNSVGHIAIIALVVLRLGQGVALGGTWDGLPSL LAMSAPPERRGWYAMIGQLGAPVGFALAASLFAYLYSNLSVQEFLDWGWRFPFFVAFAINVVALFARLRLIVGQSYTEMM QQRELEPVGALELMRSEGRNVVLGAFAALASFALFHVVTVFPLSWISMYSEQSITHVLGVQIAGAFCAAVAIAISGRLAD RVGRRNTLGAMACLIGVFSLVTPWLLSSGTVGNNIFILVGFVLLGLSYGQASGTVTANFSPRFRYTGAALSADLAWLVGA AFAPLVALGLSAKFGLIAVSVYLLSGVVCTLLALRINRLIERRE
Sequences:
>Translated_444_residues MSGLAASAYPSGSFHHEESLSHADTHEEATPSEIAVGVIIGRSSEYFDFFVFGIACVLVFPSFVFPFMTRLDGTLMAFAI FALAFVARPVGTAISMAVQRRWGRGTKLTLALFLLGASTAGMAFLPSYNSVGHIAIIALVVLRLGQGVALGGTWDGLPSL LAMSAPPERRGWYAMIGQLGAPVGFALAASLFAYLYSNLSVQEFLDWGWRFPFFVAFAINVVALFARLRLIVGQSYTEMM QQRELEPVGALELMRSEGRNVVLGAFAALASFALFHVVTVFPLSWISMYSEQSITHVLGVQIAGAFCAAVAIAISGRLAD RVGRRNTLGAMACLIGVFSLVTPWLLSSGTVGNNIFILVGFVLLGLSYGQASGTVTANFSPRFRYTGAALSADLAWLVGA AFAPLVALGLSAKFGLIAVSVYLLSGVVCTLLALRINRLIERRE >Mature_443_residues SGLAASAYPSGSFHHEESLSHADTHEEATPSEIAVGVIIGRSSEYFDFFVFGIACVLVFPSFVFPFMTRLDGTLMAFAIF ALAFVARPVGTAISMAVQRRWGRGTKLTLALFLLGASTAGMAFLPSYNSVGHIAIIALVVLRLGQGVALGGTWDGLPSLL AMSAPPERRGWYAMIGQLGAPVGFALAASLFAYLYSNLSVQEFLDWGWRFPFFVAFAINVVALFARLRLIVGQSYTEMMQ QRELEPVGALELMRSEGRNVVLGAFAALASFALFHVVTVFPLSWISMYSEQSITHVLGVQIAGAFCAAVAIAISGRLADR VGRRNTLGAMACLIGVFSLVTPWLLSSGTVGNNIFILVGFVLLGLSYGQASGTVTANFSPRFRYTGAALSADLAWLVGAA FAPLVALGLSAKFGLIAVSVYLLSGVVCTLLALRINRLIERRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=438, Percent_Identity=32.648401826484, Blast_Score=182, Evalue=4e-47, Organism=Escherichia coli, GI1788292, Length=423, Percent_Identity=29.0780141843972, Blast_Score=145, Evalue=7e-36, Organism=Escherichia coli, GI1790550, Length=407, Percent_Identity=26.044226044226, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1788942, Length=429, Percent_Identity=26.8065268065268, Blast_Score=99, Evalue=8e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 47424; Mature: 47293
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLAASAYPSGSFHHEESLSHADTHEEATPSEIAVGVIIGRSSEYFDFFVFGIACVLVF CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHH PSFVFPFMTRLDGTLMAFAIFALAFVARPVGTAISMAVQRRWGRGTKLTLALFLLGASTA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC GMAFLPSYNSVGHIAIIALVVLRLGQGVALGGTWDGLPSLLAMSAPPERRGWYAMIGQLG CEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHC APVGFALAASLFAYLYSNLSVQEFLDWGWRFPFFVAFAINVVALFARLRLIVGQSYTEMM CCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH QQRELEPVGALELMRSEGRNVVLGAFAALASFALFHVVTVFPLSWISMYSEQSITHVLGV HHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIAGAFCAAVAIAISGRLADRVGRRNTLGAMACLIGVFSLVTPWLLSSGTVGNNIFILVG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVLLGLSYGQASGTVTANFSPRFRYTGAALSADLAWLVGAAFAPLVALGLSAKFGLIAVS HHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VYLLSGVVCTLLALRINRLIERRE HHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SGLAASAYPSGSFHHEESLSHADTHEEATPSEIAVGVIIGRSSEYFDFFVFGIACVLVF CCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHH PSFVFPFMTRLDGTLMAFAIFALAFVARPVGTAISMAVQRRWGRGTKLTLALFLLGASTA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC GMAFLPSYNSVGHIAIIALVVLRLGQGVALGGTWDGLPSLLAMSAPPERRGWYAMIGQLG CEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHC APVGFALAASLFAYLYSNLSVQEFLDWGWRFPFFVAFAINVVALFARLRLIVGQSYTEMM CCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH QQRELEPVGALELMRSEGRNVVLGAFAALASFALFHVVTVFPLSWISMYSEQSITHVLGV HHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIAGAFCAAVAIAISGRLADRVGRRNTLGAMACLIGVFSLVTPWLLSSGTVGNNIFILVG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVLLGLSYGQASGTVTANFSPRFRYTGAALSADLAWLVGAAFAPLVALGLSAKFGLIAVS HHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VYLLSGVVCTLLALRINRLIERRE HHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]