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The map label for this gene is regA [H]

Identifier: 120610891

GI number: 120610891

Start: 2438105

End: 2438638

Strand: Reverse

Name: regA [H]

Synonym: Aave_2217

Alternate gene names: 120610891

Gene position: 2438638-2438105 (Counterclockwise)

Preceding gene: 120610892

Following gene: 120610889

Centisome position: 45.56

GC content: 67.04

Gene sequence:

>534_bases
ATGGACGATGAACGCCTGCTGCTGATCGTGGAGGACGACGAAGCCCTCGCCAGGACACTGGCGCGCTCCTTCGAGCGCCG
CGGCTACCGCGTGCTGCATGCCGACAGCCTGGCCGGCGTGGAGGACCTGCTGGTCCTGCATGCGCCCGGCTACGCGGTCG
TGGACCTCAAGCTCAAGGGCGAAGCCTCGGGCCTGGCCTGCGTGCAGAAACTGCACGCCCGCAACCCCGCCATGCGCATC
GTGGTGCTGACCGGCTTCGCGAGCATCGCCACGGCGGTGGAAGCGGTGAAGCTCGGCGCATGCCATTACCTCGCCAAGCC
CTCCAACACCGACGACATCGAAACCGCCTTCGGCCTTTCCGAAGGCAACACCGAGGTGGAACTGACCAACCGGTCCAGTT
CCATCAAGACCCTGGAGTGGGAGCGCATCCACGAGGTGCTGGCCGAGACGGACTTCAACATCTCCGAGGCCGCGCGCCGC
CTCGGCATGCATCGCCGCACGCTCACCCGCAAGCTCGGCAAGCAGCGGGTGTGA

Upstream 100 bases:

>100_bases
GGCAGCGTCACGGCCCGCAACCTGCCGGAGCGCGGCGCCGAGGTCAGCATCCGGCTGCCGCTGTCGGCGGTCGCGCTGCC
ACCCACCGGACACATACACC

Downstream 100 bases:

>100_bases
CCTGCCCGCCGCGCCTGACGCATGGCTGGCGCCCGGACACTACCCGAACAGCATGCCCAGGCCGAGCGCCAGCAGCCCGA
CCATCAGGCAGCGGCGGAAG

Product: two component Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDDERLLLIVEDDEALARTLARSFERRGYRVLHADSLAGVEDLLVLHAPGYAVVDLKLKGEASGLACVQKLHARNPAMRI
VVLTGFASIATAVEAVKLGACHYLAKPSNTDDIETAFGLSEGNTEVELTNRSSSIKTLEWERIHEVLAETDFNISEAARR
LGMHRRTLTRKLGKQRV

Sequences:

>Translated_177_residues
MDDERLLLIVEDDEALARTLARSFERRGYRVLHADSLAGVEDLLVLHAPGYAVVDLKLKGEASGLACVQKLHARNPAMRI
VVLTGFASIATAVEAVKLGACHYLAKPSNTDDIETAFGLSEGNTEVELTNRSSSIKTLEWERIHEVLAETDFNISEAARR
LGMHRRTLTRKLGKQRV
>Mature_177_residues
MDDERLLLIVEDDEALARTLARSFERRGYRVLHADSLAGVEDLLVLHAPGYAVVDLKLKGEASGLACVQKLHARNPAMRI
VVLTGFASIATAVEAVKLGACHYLAKPSNTDDIETAFGLSEGNTEVELTNRSSSIKTLEWERIHEVLAETDFNISEAARR
LGMHRRTLTRKLGKQRV

Specific function: Member of the two-component regulatory system regB/regA. Involved in transactivating anaerobic expression of the photosynthetic apparatus. It is a transcriptional regulator that is responsible for activating expression of the puf, puh, and puc operons in

COG id: COG4567

COG function: function code TK; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR002197
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 19564; Mature: 19564

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDERLLLIVEDDEALARTLARSFERRGYRVLHADSLAGVEDLLVLHAPGYAVVDLKLKG
CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEECCCEEEEEEEECC
EASGLACVQKLHARNPAMRIVVLTGFASIATAVEAVKLGACHYLAKPSNTDDIETAFGLS
CCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHCCC
EGNTEVELTNRSSSIKTLEWERIHEVLAETDFNISEAARRLGMHRRTLTRKLGKQRV
CCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDDERLLLIVEDDEALARTLARSFERRGYRVLHADSLAGVEDLLVLHAPGYAVVDLKLKG
CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEECCCEEEEEEEECC
EASGLACVQKLHARNPAMRIVVLTGFASIATAVEAVKLGACHYLAKPSNTDDIETAFGLS
CCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHCCC
EGNTEVELTNRSSSIKTLEWERIHEVLAETDFNISEAARRLGMHRRTLTRKLGKQRV
CCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA