Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is rluB [H]
Identifier: 120610106
GI number: 120610106
Start: 1559356
End: 1560807
Strand: Direct
Name: rluB [H]
Synonym: Aave_1419
Alternate gene names: 120610106
Gene position: 1559356-1560807 (Clockwise)
Preceding gene: 120610105
Following gene: 120610107
Centisome position: 29.13
GC content: 73.07
Gene sequence:
>1452_bases ATGAATCCATCCGAGCCCGATCACGACGGAACCGCCGCTGCCCCGCAGTCCGCAGCCGACGACGCCTCCGCGGCCCAGAA GCCCGCCCGCCGCGCGCCGCGCAAGCGGGCCGCGGCCGCTGCCGGGTCCGAATCCGCCACGGCGTCCGATCCTGCGCCTG GCGTGCCTGCCGATGGCGCCGCCAGCGCCCAGGCCGTGTCCGAACCCGCTCCACCGGAAGCCACCCCGGACGACGGCGCA CCCGGAGCGCGCCCGGCCGCGCCTGCCTCGCGGCCACAGCGGGAGCGCAGGGAGCCGGCGCCGCGTGGACCGCGGGGCCG GCCGAACCCGGCCGCTCCGGAGGGCTACCGGTTCGACGACGTGGTCTCTGGCCAGCTCGATGCCGATGAAGACCGCGCCG ACGTGGCGCCCGCCAAGCGCGTGCTGCCGCCGCAGGTGGAAATGCCCAAGCTGCACAAGGTCCTGGCCCAGGCCGGACTG GGCTCCCGGCTGGAGATGGAGCAGCTCATCCTCGAAGGCCGCATCTCCGTCAACAACGAGCCGGCCCACATCGGGCAGCG CGTCCAGTACGGGGACCAGGTCAAGGTCAATGGCCGGCCCATCCGCTACCGCATCGATCCGCCCGCGCCCCGGGTGATCG CCTACCACAAGCCCGTCGGCGAAGTCGTCACCCACGACGACCCCCAGAACCGGCCCACCGTGTTCCGCAAGCTCCCGCGC CTGGCCCATGGCAAATGGCAGTCCGTGGGGCGCCTGGACCTGAACACCGAAGGCCTGCTGCTCTTCACCAGCGCGGGCGA GCTGGCCAACAAGCTCATGCACCCCCGTTTCGGCCTGGAGCGGGAATACGCGGTGCGGGTGCTGGGCGCCCTGAGCAACG AGGAAAAGCAGCGCCTGCTCGACGGCGTCCAGCTCGAGGACGGCATGGCTGCCTTCGGCTCCATCGAGGACGGCGGGGGC GAGGGCTCGAATTGCTGGTACCGCGTCACCATCTCCGAAGGCCGCAACCGCGAGGTGCGGCGCATGCTCGAGTCGGTGGG GCATGCCGTCAGCCGCCTGATCCGCATCCGCTACGGCTCCATGATGCTGCCGCGCGGCCTCAAGCGCGGCGCGTGGCTGG AACTGGACGAGCGCGACATCCGCGCACTGATGCAGGCCGCCGGCGCCGACATGCCGCGCCCCGCCGGGCCAGGTGCCGCC GCGGGCGACCGCAAGGGAGGCGGCCCGCGCAAGGGCGGCGGGCGCGGCCAGGGTGGCCCCGGTGGCCCGGCGCCTCGGGG TGACTATTTCAATCCGCCCGCTGGCGGCCGGGGCAAGCGTGCCGCGCCGTCCTCCAGCCAGCCCGATCCGATGAAGACCT CCGTGGGCTACATCGGCAGCGACAGCCTCGCGCGCCACCGCCAGGACCAGAAGCAAAAGCGCAAGGCCTTCCAGAAGCGC GGCGGTCGCTGA
Upstream 100 bases:
>100_bases CCGTCCCGGAAGACGCCGCACCCACAGAATCACCGACGACCACCGATGACGATTCGGAGCCCCGGCGCCCCGAACCTCCG GTTCCTCCCGAAAGCACGCC
Downstream 100 bases:
>100_bases GTGCCCTGCCACATTGTGGACAAGTCCTGCCGATTAGAATCGAGGGCTTTGTCCGCAGGGCAAAAGTCTTTCTCACCATC CAAGGAAAAACCATGGCTAT
Product: ribosomal large subunit pseudouridine synthase B
Products: NA
Alternate protein names: rRNA pseudouridylate synthase B; rRNA-uridine isomerase B [H]
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR GGR
Sequences:
>Translated_483_residues MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR GGR >Mature_483_residues MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR GGR
Specific function: Responsible for synthesis of pseudouridine from uracil- 2605 in 23S ribosomal RNA [H]
COG id: COG1187
COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787524, Length=230, Percent_Identity=56.0869565217391, Blast_Score=247, Evalue=1e-66, Organism=Escherichia coli, GI1790453, Length=239, Percent_Identity=30.9623430962343, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788510, Length=177, Percent_Identity=32.7683615819209, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI87081838, Length=182, Percent_Identity=31.8681318681319, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR006145 - InterPro: IPR000748 - InterPro: IPR018496 - InterPro: IPR002942 [H]
Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]
EC number: NA
Molecular weight: Translated: 51502; Mature: 51502
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: PS50889 S4 ; PS01149 PSI_RSU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC ASAQAVSEPAPPEATPDDGAPGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDD CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH VVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGLGSRLEMEQLILEGRISVNNE HHCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC PAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR HHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHHH LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLL HHCCCHHCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH DGVQLEDGMAAFGSIEDGGGEGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGS CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC MMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAAAGDRKGGGPRKGGGRGQGGP CCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHC GGR CCC >Mature Secondary Structure MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC ASAQAVSEPAPPEATPDDGAPGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDD CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH VVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGLGSRLEMEQLILEGRISVNNE HHCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC PAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR HHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHHH LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLL HHCCCHHCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH DGVQLEDGMAAFGSIEDGGGEGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGS CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC MMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAAAGDRKGGGPRKGGGRGQGGP CCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHC GGR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]