Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is rluB [H]

Identifier: 120610106

GI number: 120610106

Start: 1559356

End: 1560807

Strand: Direct

Name: rluB [H]

Synonym: Aave_1419

Alternate gene names: 120610106

Gene position: 1559356-1560807 (Clockwise)

Preceding gene: 120610105

Following gene: 120610107

Centisome position: 29.13

GC content: 73.07

Gene sequence:

>1452_bases
ATGAATCCATCCGAGCCCGATCACGACGGAACCGCCGCTGCCCCGCAGTCCGCAGCCGACGACGCCTCCGCGGCCCAGAA
GCCCGCCCGCCGCGCGCCGCGCAAGCGGGCCGCGGCCGCTGCCGGGTCCGAATCCGCCACGGCGTCCGATCCTGCGCCTG
GCGTGCCTGCCGATGGCGCCGCCAGCGCCCAGGCCGTGTCCGAACCCGCTCCACCGGAAGCCACCCCGGACGACGGCGCA
CCCGGAGCGCGCCCGGCCGCGCCTGCCTCGCGGCCACAGCGGGAGCGCAGGGAGCCGGCGCCGCGTGGACCGCGGGGCCG
GCCGAACCCGGCCGCTCCGGAGGGCTACCGGTTCGACGACGTGGTCTCTGGCCAGCTCGATGCCGATGAAGACCGCGCCG
ACGTGGCGCCCGCCAAGCGCGTGCTGCCGCCGCAGGTGGAAATGCCCAAGCTGCACAAGGTCCTGGCCCAGGCCGGACTG
GGCTCCCGGCTGGAGATGGAGCAGCTCATCCTCGAAGGCCGCATCTCCGTCAACAACGAGCCGGCCCACATCGGGCAGCG
CGTCCAGTACGGGGACCAGGTCAAGGTCAATGGCCGGCCCATCCGCTACCGCATCGATCCGCCCGCGCCCCGGGTGATCG
CCTACCACAAGCCCGTCGGCGAAGTCGTCACCCACGACGACCCCCAGAACCGGCCCACCGTGTTCCGCAAGCTCCCGCGC
CTGGCCCATGGCAAATGGCAGTCCGTGGGGCGCCTGGACCTGAACACCGAAGGCCTGCTGCTCTTCACCAGCGCGGGCGA
GCTGGCCAACAAGCTCATGCACCCCCGTTTCGGCCTGGAGCGGGAATACGCGGTGCGGGTGCTGGGCGCCCTGAGCAACG
AGGAAAAGCAGCGCCTGCTCGACGGCGTCCAGCTCGAGGACGGCATGGCTGCCTTCGGCTCCATCGAGGACGGCGGGGGC
GAGGGCTCGAATTGCTGGTACCGCGTCACCATCTCCGAAGGCCGCAACCGCGAGGTGCGGCGCATGCTCGAGTCGGTGGG
GCATGCCGTCAGCCGCCTGATCCGCATCCGCTACGGCTCCATGATGCTGCCGCGCGGCCTCAAGCGCGGCGCGTGGCTGG
AACTGGACGAGCGCGACATCCGCGCACTGATGCAGGCCGCCGGCGCCGACATGCCGCGCCCCGCCGGGCCAGGTGCCGCC
GCGGGCGACCGCAAGGGAGGCGGCCCGCGCAAGGGCGGCGGGCGCGGCCAGGGTGGCCCCGGTGGCCCGGCGCCTCGGGG
TGACTATTTCAATCCGCCCGCTGGCGGCCGGGGCAAGCGTGCCGCGCCGTCCTCCAGCCAGCCCGATCCGATGAAGACCT
CCGTGGGCTACATCGGCAGCGACAGCCTCGCGCGCCACCGCCAGGACCAGAAGCAAAAGCGCAAGGCCTTCCAGAAGCGC
GGCGGTCGCTGA

Upstream 100 bases:

>100_bases
CCGTCCCGGAAGACGCCGCACCCACAGAATCACCGACGACCACCGATGACGATTCGGAGCCCCGGCGCCCCGAACCTCCG
GTTCCTCCCGAAAGCACGCC

Downstream 100 bases:

>100_bases
GTGCCCTGCCACATTGTGGACAAGTCCTGCCGATTAGAATCGAGGGCTTTGTCCGCAGGGCAAAAGTCTTTCTCACCATC
CAAGGAAAAACCATGGCTAT

Product: ribosomal large subunit pseudouridine synthase B

Products: NA

Alternate protein names: rRNA pseudouridylate synthase B; rRNA-uridine isomerase B [H]

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA
PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL
GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR
LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG
EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA
AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR
GGR

Sequences:

>Translated_483_residues
MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA
PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL
GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR
LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG
EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA
AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR
GGR
>Mature_483_residues
MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGAASAQAVSEPAPPEATPDDGA
PGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDDVVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGL
GSRLEMEQLILEGRISVNNEPAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR
LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLLDGVQLEDGMAAFGSIEDGGG
EGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGSMMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAA
AGDRKGGGPRKGGGRGQGGPGGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR
GGR

Specific function: Responsible for synthesis of pseudouridine from uracil- 2605 in 23S ribosomal RNA [H]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=230, Percent_Identity=56.0869565217391, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1790453, Length=239, Percent_Identity=30.9623430962343, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788510, Length=177, Percent_Identity=32.7683615819209, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081838, Length=182, Percent_Identity=31.8681318681319, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 51502; Mature: 51502

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
ASAQAVSEPAPPEATPDDGAPGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDD
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH
VVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGLGSRLEMEQLILEGRISVNNE
HHCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
PAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR
HHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHHH
LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLL
HHCCCHHCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH
DGVQLEDGMAAFGSIEDGGGEGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGS
CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
MMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAAAGDRKGGGPRKGGGRGQGGP
CCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
GGR
CCC
>Mature Secondary Structure
MNPSEPDHDGTAAAPQSAADDASAAQKPARRAPRKRAAAAAGSESATASDPAPGVPADGA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
ASAQAVSEPAPPEATPDDGAPGARPAAPASRPQRERREPAPRGPRGRPNPAAPEGYRFDD
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH
VVSGQLDADEDRADVAPAKRVLPPQVEMPKLHKVLAQAGLGSRLEMEQLILEGRISVNNE
HHCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
PAHIGQRVQYGDQVKVNGRPIRYRIDPPAPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPR
HHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHHH
LAHGKWQSVGRLDLNTEGLLLFTSAGELANKLMHPRFGLEREYAVRVLGALSNEEKQRLL
HHCCCHHCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH
DGVQLEDGMAAFGSIEDGGGEGSNCWYRVTISEGRNREVRRMLESVGHAVSRLIRIRYGS
CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
MMLPRGLKRGAWLELDERDIRALMQAAGADMPRPAGPGAAAGDRKGGGPRKGGGRGQGGP
CCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGPAPRGDYFNPPAGGRGKRAAPSSSQPDPMKTSVGYIGSDSLARHRQDQKQKRKAFQKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
GGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]