Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is scpB [H]

Identifier: 120610105

GI number: 120610105

Start: 1558535

End: 1559359

Strand: Direct

Name: scpB [H]

Synonym: Aave_1418

Alternate gene names: 120610105

Gene position: 1558535-1559359 (Clockwise)

Preceding gene: 120610104

Following gene: 120610106

Centisome position: 29.12

GC content: 69.58

Gene sequence:

>825_bases
ATGAATACGGTGGATGCCAAACGGGTCCTCGAAACCGCGCTGATCTGTGCGCCGCAGCCCGCGATGCTGCGGGAGCTGCG
CACGCTCTTTCAAGATGCGCTGGGCGCCGACACCATCAAGCGGTTGCTGGTGGAGCTGCAGCAGGAGTGGTCCCAGCGCG
GCGTCGAGCTCGTGCAGGTGGCCTCGGGCTGGCGGTTCCAGAGCCGGCCCGAGATGCGCGAATACCTGGACCGGCTCCAT
CCCGAGAAGCCCCCGCGCTATACCCGCGCCGCCCTCGAGACGCTGGCCATCATCGCCTACCGGCAGCCCGTCACCCGTGG
CGATATCGAAGAGATCCGCGGCGTGACCGTCAACAGCCTGATCCTCAAGCAACTCGAGGACCGGGGCTGGGTGGAAGTGA
TCGGGCACCGCGAGACCGTCGGCCGTCCCGCCCTGTTCGCGACCACCCGCCAGTTTCTCGACGACCTGGGGCTGAAGTCC
CTGGACGAGCTGCCCATGCTGGAAAATCCCGCTGTCCAGTCCAGCGTCCTGGAGGCCCTGGAGCGCGGGGCGGCAGAGCC
AGGAGACGACGGACCGGGGGATGCCGCCGAGGCACCTCCCGCCTCGCCCGCGGAGCCTGACTCCGCCGACGCACCGGGCG
ACCCCGACCTCGATCCCGGTCCCCATCCGGGTCCCCCGGAGCCCGCCGGCAGCGATGCCGACGCCACCGATGCCGCCTCT
ACCGTCCCGGAAGACGCCGCACCCACAGAATCACCGACGACCACCGATGACGATTCGGAGCCCCGGCGCCCCGAACCTCC
GGTTCCTCCCGAAAGCACGCCATGA

Upstream 100 bases:

>100_bases
CCTGCATGGCGGGCCAGCAGAGTTCTGCCAGCCGCTGGAGCCTCCCAACCTCGTGCGGTGCCCCGCGGCCAGCGGCACCG
CCAACCGCCATCGCTGAACC

Downstream 100 bases:

>100_bases
ATCCATCCGAGCCCGATCACGACGGAACCGCCGCTGCCCCGCAGTCCGCAGCCGACGACGCCTCCGCGGCCCAGAAGCCC
GCCCGCCGCGCGCCGCGCAA

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH
PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS
LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS
TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP

Sequences:

>Translated_274_residues
MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH
PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS
LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS
TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP
>Mature_274_residues
MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH
PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS
LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS
TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 29676; Mature: 29676

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
ASGWRFQSRPEMREYLDRLHPEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSL
HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH
ILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKSLDELPMLENPAVQSSVLEAL
HHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHH
ERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
ASGWRFQSRPEMREYLDRLHPEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSL
HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH
ILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKSLDELPMLENPAVQSSVLEAL
HHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHH
ERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]