Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is scpB [H]
Identifier: 120610105
GI number: 120610105
Start: 1558535
End: 1559359
Strand: Direct
Name: scpB [H]
Synonym: Aave_1418
Alternate gene names: 120610105
Gene position: 1558535-1559359 (Clockwise)
Preceding gene: 120610104
Following gene: 120610106
Centisome position: 29.12
GC content: 69.58
Gene sequence:
>825_bases ATGAATACGGTGGATGCCAAACGGGTCCTCGAAACCGCGCTGATCTGTGCGCCGCAGCCCGCGATGCTGCGGGAGCTGCG CACGCTCTTTCAAGATGCGCTGGGCGCCGACACCATCAAGCGGTTGCTGGTGGAGCTGCAGCAGGAGTGGTCCCAGCGCG GCGTCGAGCTCGTGCAGGTGGCCTCGGGCTGGCGGTTCCAGAGCCGGCCCGAGATGCGCGAATACCTGGACCGGCTCCAT CCCGAGAAGCCCCCGCGCTATACCCGCGCCGCCCTCGAGACGCTGGCCATCATCGCCTACCGGCAGCCCGTCACCCGTGG CGATATCGAAGAGATCCGCGGCGTGACCGTCAACAGCCTGATCCTCAAGCAACTCGAGGACCGGGGCTGGGTGGAAGTGA TCGGGCACCGCGAGACCGTCGGCCGTCCCGCCCTGTTCGCGACCACCCGCCAGTTTCTCGACGACCTGGGGCTGAAGTCC CTGGACGAGCTGCCCATGCTGGAAAATCCCGCTGTCCAGTCCAGCGTCCTGGAGGCCCTGGAGCGCGGGGCGGCAGAGCC AGGAGACGACGGACCGGGGGATGCCGCCGAGGCACCTCCCGCCTCGCCCGCGGAGCCTGACTCCGCCGACGCACCGGGCG ACCCCGACCTCGATCCCGGTCCCCATCCGGGTCCCCCGGAGCCCGCCGGCAGCGATGCCGACGCCACCGATGCCGCCTCT ACCGTCCCGGAAGACGCCGCACCCACAGAATCACCGACGACCACCGATGACGATTCGGAGCCCCGGCGCCCCGAACCTCC GGTTCCTCCCGAAAGCACGCCATGA
Upstream 100 bases:
>100_bases CCTGCATGGCGGGCCAGCAGAGTTCTGCCAGCCGCTGGAGCCTCCCAACCTCGTGCGGTGCCCCGCGGCCAGCGGCACCG CCAACCGCCATCGCTGAACC
Downstream 100 bases:
>100_bases ATCCATCCGAGCCCGATCACGACGGAACCGCCGCTGCCCCGCAGTCCGCAGCCGACGACGCCTCCGCGGCCCAGAAGCCC GCCCGCCGCGCGCCGCGCAA
Product: condensin subunit ScpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP
Sequences:
>Translated_274_residues MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP >Mature_274_residues MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQVASGWRFQSRPEMREYLDRLH PEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSLILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKS LDELPMLENPAVQSSVLEALERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP
Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]
COG id: COG1386
COG function: function code K; Predicted transcriptional regulator containing the HTH domain
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the scpB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005234 - InterPro: IPR011991 [H]
Pfam domain/function: PF04079 DUF387 [H]
EC number: NA
Molecular weight: Translated: 29676; Mature: 29676
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQV CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH ASGWRFQSRPEMREYLDRLHPEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSL HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH ILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKSLDELPMLENPAVQSSVLEAL HHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHH ERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNTVDAKRVLETALICAPQPAMLRELRTLFQDALGADTIKRLLVELQQEWSQRGVELVQV CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH ASGWRFQSRPEMREYLDRLHPEKPPRYTRAALETLAIIAYRQPVTRGDIEEIRGVTVNSL HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH ILKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLKSLDELPMLENPAVQSSVLEAL HHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHH ERGAAEPGDDGPGDAAEAPPASPAEPDSADAPGDPDLDPGPHPGPPEPAGSDADATDAAS HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH TVPEDAAPTESPTTTDDDSEPRRPEPPVPPESTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]