Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is qseD [H]
Identifier: 120610079
GI number: 120610079
Start: 1525429
End: 1526409
Strand: Reverse
Name: qseD [H]
Synonym: Aave_1392
Alternate gene names: 120610079
Gene position: 1526409-1525429 (Counterclockwise)
Preceding gene: 120610081
Following gene: 120610077
Centisome position: 28.52
GC content: 74.82
Gene sequence:
>981_bases ATGGGCCCCGGCAACCGACCGCTGGATCTGGAGTGGCTGGAGGATTTCCTCGCCCTCGCCGAGAGCGGCAATTTCTCGCG CGCGGCCGAGGCCCGCGCCATCGCGCAGCCGGCATTCAGCCGCCACATCCGCGCGCTGGAGGACTGGGTGGGCGCCGAGC TGTTCGACCGCAGCGCGCACCCGGCCACCCTCACGGCGGCGGGGCAGCGCTTCCAGCCCCTGCTGGAAGACGTGCTTGCG CGGCTGGAGGCGGCGCGGATCAAGGCCTGCGCGGCGCAGGCCCAGGCGGCGGCCAGCCTGCGCTTCGCGGCGACGCACGT GCTCTCGCTCACCTTCTTCCCGCGATGGCTAGGGGGCCTGGAGTCGCAGCTGCGGCTGGGGCCGATCCAGACGATTTCCG ACAGCTACCAGGCCTGCGAGGACCTGGCCATGCAGCGGCGCGTGCAGTTCGTGCTGTGCCACGGCCATGCGGCCGTGCCG GGACGGCTGGACGAGGCGGGCTACCCGGCGGCGCGCCTGGCGGACGACGTGCTGCAGCCCGTGTCGGCGCCGCAGGGGGA CGGCACGCCGCTGCATGCGATACCGGGCCCGGAATCGCAGGGCGGCGCGCGGCCGCCGCTGCCGGTGCTGGCGTACAGCG ATGCCTCGGGCCTGGGGCGCATCATGCGCGCGCTGCGCAAGGGGGTGTTCGACGCGGGGGGCGTGGCCGGCATGCCGGGC GAGGTGGAGGTGGTGTTTACCGCCCACCATGCGGCGCTGCTCAAGGCGATGGCGCTCGAAGGCCGCGGCATGGCCTGGCT GCCGCGCAGCCTGATCGCGGAGGAACTGCAATCAGGCGCGCTGGTGGCCGCCGGGCCGGCCGGCTGGGACGTGCCGGTGG AGATCCGGCTGTACCGGCAGCGCACGGAGATGTCGGACGCGGCGGAGACGCTCTGGCGCCTCGCCGCGGGCGGGCAGGCC GCAGGCGGCGCCCTGCCCTGA
Upstream 100 bases:
>100_bases AGAAGGGGAGCGCAGCGGATGATTCCCGCCCCGCCCGCGGCCGTCCAATACCCGAATCGCATACAACTATCCGCGCGTGC CGCCACGCGCCAGGAGACGC
Downstream 100 bases:
>100_bases CACGCGCCGCCTGGCGGCGGGCGGTCAGTCCTTGTGGAAGCGCGTGCCCTGGCCGATGGTGCAGCGGTAGGCCACGGACG GCGTGCGCAGGTCGTAGCCC
Product: LysR family transcriptional regulator
Products: NA
Alternate protein names: Quorum-sensing regulator protein D [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLA RLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVP GRLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQA AGGALP
Sequences:
>Translated_326_residues MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLA RLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVP GRLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQA AGGALP >Mature_325_residues GPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLAR LEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPG RLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPGE VEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQAA GGALP
Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790783, Length=307, Percent_Identity=32.2475570032573, Blast_Score=133, Evalue=2e-32,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 34525; Mature: 34394
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAH CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PATLTAAGQRFQPLLEDVLARLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGL CCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPGRLDEAGYPAARLADDVLQP HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH VSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQ CEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHH RTEMSDAAETLWRLAAGGQAAGGALP HHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure GPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAH CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PATLTAAGQRFQPLLEDVLARLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGL CCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPGRLDEAGYPAARLADDVLQP HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH VSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQ CEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHH RTEMSDAAETLWRLAAGGQAAGGALP HHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 7876157 [H]