Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is frc [H]
Identifier: 120610076
GI number: 120610076
Start: 1522504
End: 1523739
Strand: Direct
Name: frc [H]
Synonym: Aave_1389
Alternate gene names: 120610076
Gene position: 1522504-1523739 (Clockwise)
Preceding gene: 120610072
Following gene: 120610078
Centisome position: 28.44
GC content: 71.2
Gene sequence:
>1236_bases ATGACGTTTTCTTCCGCATCCCCGTCCCCGTCCCCGTCCTCTTCCCCGCAACGCCCCCTGCCGCTGTCCGGCCTGCGCGT GGTGGAGTTCACCCACATGGTCATGGGGCCGACCTGCGGCATGGTGCTGGCCGACCTCGGCGCCGAGGTCATCAAGGTCG AACCCGTGGACGGCGACCGCACGCGCCACCTGCTGGGCGCGGGCGCGGGCTTCTTCCCCATGTTCAACCGCAACAAGAAG AGCATCGCCATCGACCTGCGCAGTCCCGGGGGCCTGGAGGTGGCGATCCGCCTCGCGTCCTCCGCCGACGTGGTGGCGCA GAACTTCAAGCCCGGCGTCATGGCCAAGTACGGCCTGGACTACGGCGCGCTCTCGCGCCTGAACGAAGGGCTGGTGTACG TGAACCACGCCGGCTTCCTGCCGGGGCCCTACGAGCACCGCACGGCGCTCGACGAGGTGGTGCAGATGATGGGCGGCCTC GCCTACATGACCGGCCGTCCCGGTGACCCGCTGCGCGCCGGCGCCAGCGTGAACGACATCATGGGCGGCATGTTCGGCGC CATCGGGGCCATGGCGGCGCTGATGCAGCGCGCGCACACCGGGCGCGGGCAGGAGGTGGATTCCGCGCTGTTCGAGAACA ACGTGTTCCTGGTGGGCCAGCACATGATGCAGTACGCCGTGACCGGGCAGCCGGCAGCGCCCATGCCGGACCGCATCTCT TCCTGGGCCGTGTACGACGTGTTCGGCGTGAAGGACGGCGGGCAGATCTTCCTGGCGGCGGTGAGCGACGCGCAGTGGCA GACCTTCTGCGATGCCATGGGCTACGCCGATCTGAAAGCCGACCCGGCCCTGGCCACCAACAACGACCGCGTGCGGGCCC GGGGCACGTTGTTGCCGGAGCTGCGGCGGCGCCTCGCGCAGCACACGGCCGACGCGCTCGCCGCCATCTTCGAGCGCCAC GGCCTGCCGTTCGCGCCCATCCTGCGGCCCGAACAGCTCTTCGACGATCCCCACCTGAACGCCACCGGCGGCCTGGCCGA AGTCACGCTGCCCGACGGCGATCGCGCCGGCGAGCGAGCGCGCGTCACCCTCCTGCCGCTGCGCATGGACGGCGGACGCC TGCCCGTGCGCGCCGATCCGCCGCGCCTGGGCGAACACACGCGCGAACTGCTCGAAAGCCTGGGATACGCCCCGGACGCC ATCGACGCGCTGCGCGAGGCCCGCGCCGTGGCCTGA
Upstream 100 bases:
>100_bases CAGGTGTTACCGGCCTGTTGCATTCCCGCCGTGGAATCTCCCCCACGGCAGGCCCGGCGGGGGCGGCGGTGCCGCGTGCC CGTGGGACACTTGCGGTCCC
Downstream 100 bases:
>100_bases CCAGCCGCCGGCCTGCCGCAGGGGGACGTCAGCAGGCCCCGGAGCGGGGCGCCTGCGGCCGGGCCCGCGTCGCGAGCCAG CACAGCACCGCGCCGCCGCA
Product: L-carnitine dehydratase/bile acid-inducible protein F
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MTFSSASPSPSPSSSPQRPLPLSGLRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVDGDRTRHLLGAGAGFFPMFNRNKK SIAIDLRSPGGLEVAIRLASSADVVAQNFKPGVMAKYGLDYGALSRLNEGLVYVNHAGFLPGPYEHRTALDEVVQMMGGL AYMTGRPGDPLRAGASVNDIMGGMFGAIGAMAALMQRAHTGRGQEVDSALFENNVFLVGQHMMQYAVTGQPAAPMPDRIS SWAVYDVFGVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPALATNNDRVRARGTLLPELRRRLAQHTADALAAIFERH GLPFAPILRPEQLFDDPHLNATGGLAEVTLPDGDRAGERARVTLLPLRMDGGRLPVRADPPRLGEHTRELLESLGYAPDA IDALREARAVA
Sequences:
>Translated_411_residues MTFSSASPSPSPSSSPQRPLPLSGLRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVDGDRTRHLLGAGAGFFPMFNRNKK SIAIDLRSPGGLEVAIRLASSADVVAQNFKPGVMAKYGLDYGALSRLNEGLVYVNHAGFLPGPYEHRTALDEVVQMMGGL AYMTGRPGDPLRAGASVNDIMGGMFGAIGAMAALMQRAHTGRGQEVDSALFENNVFLVGQHMMQYAVTGQPAAPMPDRIS SWAVYDVFGVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPALATNNDRVRARGTLLPELRRRLAQHTADALAAIFERH GLPFAPILRPEQLFDDPHLNATGGLAEVTLPDGDRAGERARVTLLPLRMDGGRLPVRADPPRLGEHTRELLESLGYAPDA IDALREARAVA >Mature_410_residues TFSSASPSPSPSSSPQRPLPLSGLRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVDGDRTRHLLGAGAGFFPMFNRNKKS IAIDLRSPGGLEVAIRLASSADVVAQNFKPGVMAKYGLDYGALSRLNEGLVYVNHAGFLPGPYEHRTALDEVVQMMGGLA YMTGRPGDPLRAGASVNDIMGGMFGAIGAMAALMQRAHTGRGQEVDSALFENNVFLVGQHMMQYAVTGQPAAPMPDRISS WAVYDVFGVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPALATNNDRVRARGTLLPELRRRLAQHTADALAAIFERHG LPFAPILRPEQLFDDPHLNATGGLAEVTLPDGDRAGERARVTLLPLRMDGGRLPVRADPPRLGEHTRELLESLGYAPDAI DALREARAVA
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=408, Percent_Identity=30.8823529411765, Blast_Score=184, Evalue=9e-47, Organism=Homo sapiens, GI300863124, Length=430, Percent_Identity=30, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI13376042, Length=430, Percent_Identity=27.6744186046512, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI300863126, Length=407, Percent_Identity=28.009828009828, Blast_Score=136, Evalue=3e-32, Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=26.5508684863524, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=26.5508684863524, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI266458393, Length=203, Percent_Identity=33.0049261083744, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI266458397, Length=203, Percent_Identity=33.0049261083744, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI42822893, Length=120, Percent_Identity=36.6666666666667, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI266458395, Length=120, Percent_Identity=36.6666666666667, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI87082093, Length=333, Percent_Identity=31.5315315315315, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=30.0236406619385, Blast_Score=155, Evalue=5e-39, Organism=Escherichia coli, GI1786222, Length=393, Percent_Identity=23.9185750636132, Blast_Score=73, Evalue=4e-14, Organism=Caenorhabditis elegans, GI32564160, Length=322, Percent_Identity=26.3975155279503, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115535051, Length=320, Percent_Identity=25.3125, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=35, Blast_Score=212, Evalue=3e-55, Organism=Drosophila melanogaster, GI24585488, Length=334, Percent_Identity=26.0479041916168, Blast_Score=98, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 43993; Mature: 43862
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFSSASPSPSPSSSPQRPLPLSGLRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVDGDR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCH TRHLLGAGAGFFPMFNRNKKSIAIDLRSPGGLEVAIRLASSADVVAQNFKPGVMAKYGLD HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCCCCEEECCCC YGALSRLNEGLVYVNHAGFLPGPYEHRTALDEVVQMMGGLAYMTGRPGDPLRAGASVNDI HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHH MGGMFGAIGAMAALMQRAHTGRGQEVDSALFENNVFLVGQHMMQYAVTGQPAAPMPDRIS HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEHHHHHHHHCCCCCCCCCHHHC SWAVYDVFGVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPALATNNDRVRARGTLLPE CEEEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCHHHH LRRRLAQHTADALAAIFERHGLPFAPILRPEQLFDDPHLNATGGLAEVTLPDGDRAGERA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCE RVTLLPLRMDGGRLPVRADPPRLGEHTRELLESLGYAPDAIDALREARAVA EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC >Mature Secondary Structure TFSSASPSPSPSSSPQRPLPLSGLRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVDGDR CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCH TRHLLGAGAGFFPMFNRNKKSIAIDLRSPGGLEVAIRLASSADVVAQNFKPGVMAKYGLD HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCCCCEEECCCC YGALSRLNEGLVYVNHAGFLPGPYEHRTALDEVVQMMGGLAYMTGRPGDPLRAGASVNDI HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHH MGGMFGAIGAMAALMQRAHTGRGQEVDSALFENNVFLVGQHMMQYAVTGQPAAPMPDRIS HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEHHHHHHHHCCCCCCCCCHHHC SWAVYDVFGVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPALATNNDRVRARGTLLPE CEEEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCHHHH LRRRLAQHTADALAAIFERHGLPFAPILRPEQLFDDPHLNATGGLAEVTLPDGDRAGERA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCE RVTLLPLRMDGGRLPVRADPPRLGEHTRELLESLGYAPDAIDALREARAVA EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA