Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is 120610078

Identifier: 120610078

GI number: 120610078

Start: 1524964

End: 1525404

Strand: Direct

Name: 120610078

Synonym: Aave_1391

Alternate gene names: NA

Gene position: 1524964-1525404 (Clockwise)

Preceding gene: 120610076

Following gene: 120610080

Centisome position: 28.49

GC content: 69.84

Gene sequence:

>441_bases
ATGGTCCGACTGCTGCCCTACCGCACCTACTGCCTGCTGCTCGCGCCCTCCCTCTGGATGGCAGCCGCCCATGCCGGCGA
TGTCCTGCCCACCCATGCCGCCATCCAGCAGGCGCTGGACCAGGGCGGGAACGTCTCCGTCGCCATCGATCTCTCGCAAT
GCGTGCCCCAGGGCGCGGCGGCGCCCTCGCAGACGCGCGGCGGCCTGCGCATCGGCGCCTACCGCATCGTGCAGGACGGC
ACCGTCTCCTTCAGCGACTCGCACTTCACCGTGGCGGGCGACGGCCAGCCCATCGTCCAGTTCATGCGCTACCAGGTGCG
CCCCGACCAGTCCGTGGACTTCTCCACCTGGATGTTCAACCTGCCGGGCTACGACCTGCGCACGCCGTCCGTGGCCTACC
GCTGCACCATCGGCCAGGGCACGCGCTTCCACAAGGACTGA

Upstream 100 bases:

>100_bases
GCCGTGGCCACCGTCCGGGGCAGGGGTGTCACGGACGCGACGGCTGCCTACCATGGGCACGCTTTTGCTTCCAACCTCCT
GCATCGAAAGGTTCGCACCC

Downstream 100 bases:

>100_bases
CCGCCCGCCGCCAGGCGGCGCGTGTCAGGGCAGGGCGCCGCCTGCGGCCTGCCCGCCCGCGGCGAGGCGCCAGAGCGTCT
CCGCCGCGTCCGACATCTCC

Product: VirK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MVRLLPYRTYCLLLAPSLWMAAAHAGDVLPTHAAIQQALDQGGNVSVAIDLSQCVPQGAAAPSQTRGGLRIGAYRIVQDG
TVSFSDSHFTVAGDGQPIVQFMRYQVRPDQSVDFSTWMFNLPGYDLRTPSVAYRCTIGQGTRFHKD

Sequences:

>Translated_146_residues
MVRLLPYRTYCLLLAPSLWMAAAHAGDVLPTHAAIQQALDQGGNVSVAIDLSQCVPQGAAAPSQTRGGLRIGAYRIVQDG
TVSFSDSHFTVAGDGQPIVQFMRYQVRPDQSVDFSTWMFNLPGYDLRTPSVAYRCTIGQGTRFHKD
>Mature_146_residues
MVRLLPYRTYCLLLAPSLWMAAAHAGDVLPTHAAIQQALDQGGNVSVAIDLSQCVPQGAAAPSQTRGGLRIGAYRIVQDG
TVSFSDSHFTVAGDGQPIVQFMRYQVRPDQSVDFSTWMFNLPGYDLRTPSVAYRCTIGQGTRFHKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010694 [H]

Pfam domain/function: PF06903 VirK [H]

EC number: NA

Molecular weight: Translated: 15931; Mature: 15931

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRLLPYRTYCLLLAPSLWMAAAHAGDVLPTHAAIQQALDQGGNVSVAIDLSQCVPQGAA
CEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCCC
APSQTRGGLRIGAYRIVQDGTVSFSDSHFTVAGDGQPIVQFMRYQVRPDQSVDFSTWMFN
CCCCCCCCEEEEEEEEEECCEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEE
LPGYDLRTPSVAYRCTIGQGTRFHKD
CCCCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MVRLLPYRTYCLLLAPSLWMAAAHAGDVLPTHAAIQQALDQGGNVSVAIDLSQCVPQGAA
CEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCCC
APSQTRGGLRIGAYRIVQDGTVSFSDSHFTVAGDGQPIVQFMRYQVRPDQSVDFSTWMFN
CCCCCCCCEEEEEEEEEECCEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEE
LPGYDLRTPSVAYRCTIGQGTRFHKD
CCCCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]