Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ycfJ [C]
Identifier: 120610017
GI number: 120610017
Start: 1456206
End: 1456763
Strand: Direct
Name: ycfJ [C]
Synonym: Aave_1330
Alternate gene names: 120610017
Gene position: 1456206-1456763 (Clockwise)
Preceding gene: 120610016
Following gene: 120610019
Centisome position: 27.2
GC content: 70.07
Gene sequence:
>558_bases ATGCTCCAATGGGTTGACCGGCGGGGCCCGAGCCTTGTCCATTTCCGCAAGAAGGAGTCGAACATGCTGAAGTTTTCCCG CACCACCGCTGCGATCGCCACCGTGGCCCTCGCCGGCGTCCTGGGCGCCTGCGCCGAGCAGCCGCGCTACGGTTCGCAGT ATCCCGGCCAGCCCACCTATTCGAGCTATCCGTCTTCCGCGCCGGCCGGCATGGAATACGGCACGGTGACCAACATCGAG ATGCTGCAGGGCCGCAGCGGCAACAGCGGTGTGGGCGTCGGCACCGTGGCCGGCGCCGTGATCGGCGGCGTGCTGGGCAA CCAGGTGGGCAAGGGCACCGGCCGTGCGGCCGCCACCGTGCTGGGCGCCGTCGGCGGCGGCGTGGTGGGCAACCAGATCG AGAACCGCAACGGCAGCAATGACGGCCGCGCCGATGGCTACCGCATCACGGTGCAGCTCGACCAGGGCGGCCAGCGTGCC TACGATGTGAGTTCCCCCGGCGACCTGCGTCCCGGCGACCGCGTGCGCCTGAACGGCGGCCAGATCTCCCGCATGTGA
Upstream 100 bases:
>100_bases ACGGCTCCACGGGCAAGGTGTAGGTATCGTCCTATCCGTCCGGGGCGATGGTGCCTACGGCGGCCGCGGCCATCTCCCGT CGCGTACCGCGGCCGGCCCC
Downstream 100 bases:
>100_bases TCACGGCGCAGCGCCTGGCGGTATCGCCGTGGCCTCCAGGAAAAAGGACCCGAGGGGTCCTTTTTTTTCGGCCGTGCTCT CTGCCGGGCAGCCGGCGTTG
Product: 17 kDa surface antigen
Products: NA
Alternate protein names: 17 Kda Surface Antigen
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MLQWVDRRGPSLVHFRKKESNMLKFSRTTAAIATVALAGVLGACAEQPRYGSQYPGQPTYSSYPSSAPAGMEYGTVTNIE MLQGRSGNSGVGVGTVAGAVIGGVLGNQVGKGTGRAAATVLGAVGGGVVGNQIENRNGSNDGRADGYRITVQLDQGGQRA YDVSSPGDLRPGDRVRLNGGQISRM
Sequences:
>Translated_185_residues MLQWVDRRGPSLVHFRKKESNMLKFSRTTAAIATVALAGVLGACAEQPRYGSQYPGQPTYSSYPSSAPAGMEYGTVTNIE MLQGRSGNSGVGVGTVAGAVIGGVLGNQVGKGTGRAAATVLGAVGGGVVGNQIENRNGSNDGRADGYRITVQLDQGGQRA YDVSSPGDLRPGDRVRLNGGQISRM >Mature_185_residues MLQWVDRRGPSLVHFRKKESNMLKFSRTTAAIATVALAGVLGACAEQPRYGSQYPGQPTYSSYPSSAPAGMEYGTVTNIE MLQGRSGNSGVGVGTVAGAVIGGVLGNQVGKGTGRAAATVLGAVGGGVVGNQIENRNGSNDGRADGYRITVQLDQGGQRA YDVSSPGDLRPGDRVRLNGGQISRM
Specific function: Unknown
COG id: COG3133
COG function: function code M; Outer membrane lipoprotein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19087; Mature: 19087
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQWVDRRGPSLVHFRKKESNMLKFSRTTAAIATVALAGVLGACAEQPRYGSQYPGQPTY CCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SSYPSSAPAGMEYGTVTNIEMLQGRSGNSGVGVGTVAGAVIGGVLGNQVGKGTGRAAATV CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH LGAVGGGVVGNQIENRNGSNDGRADGYRITVQLDQGGQRAYDVSSPGDLRPGDRVRLNGG HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECCC QISRM EECCC >Mature Secondary Structure MLQWVDRRGPSLVHFRKKESNMLKFSRTTAAIATVALAGVLGACAEQPRYGSQYPGQPTY CCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SSYPSSAPAGMEYGTVTNIEMLQGRSGNSGVGVGTVAGAVIGGVLGNQVGKGTGRAAATV CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH LGAVGGGVVGNQIENRNGSNDGRADGYRITVQLDQGGQRAYDVSSPGDLRPGDRVRLNGG HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECCC QISRM EECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA