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The map label for this gene is ycfD [H]

Identifier: 120610019

GI number: 120610019

Start: 1457478

End: 1458614

Strand: Direct

Name: ycfD [H]

Synonym: Aave_1332

Alternate gene names: 120610019

Gene position: 1457478-1458614 (Clockwise)

Preceding gene: 120610017

Following gene: 120610020

Centisome position: 27.23

GC content: 71.68

Gene sequence:

>1137_bases
ATGGATACCCATATTCCCCTCGCCCTGCTGGGCGGCATGACCCCCGCGCAATTCATGCGCCGCCATTGGCAGAAGAAGCC
GCTGCTGGTGCGCCAGGCCATCGCCCCGTTCGTGCCGCCCGTGGGGCGCCAGGAGCTGTTCGCGCTGGCGGCGCAGGAGA
GTGTGGAATCGCGCCTGGTGCAGCAGAAGAAGGGGGCCTGGAGCCTGCGCCACGGCCCCTTCGCGCGCCGCTCGCTGCCC
CCGCTCGCCACGCCGGACTGGACGCTGCTCGTGCAGGGCGTGGACCTGCACGACGATGCCGTGCATGCGCTCCTGCAGCA
GTTCCGTTTCGTGCCGCAGGCCCGTCTGGACGACCTGATGATCAGCTACGCCACCGACGGCGGGGGCGTGGGGCCGCACT
TCGACAGCTACGACGTGTTCCTGCTGCAGGCCCATGGCCGGCGGCGCTGGCGCATCGGGCGGCAGAAGGACCTGGCGCTC
AAGGAGGGCATCCCGCTCAAGATCCTGGAGAACTTCGAGCCTGAGCAGGAGTTCGTGCTGGAGCCCGGCGACATGCTCTA
CCTGCCGCCGCGCTGGGCGCACGACGGCATCGCCGAGGGCGAGTGCATGACCTATTCCATCGGCTTCCGTTCGCCGTCGC
GCACGGGCCTCGCCCAGGACCTGCTCACCCGGCTGTCGGACGGGCCGGACGAAGAGGGCGCGTTGTCCCCGCACCTGTAC
CGAGACCCCGCGCAGGATGCGGCGGACCGCCCCGGGGAGATTCCCGCTGCGCTGCTGGACTTCGCGCGCGATGCCCTGGC
GCGGGCGCTGGCCGAGCCGCTGGCCGTGGAGCGCGCGCTGGGCGAGAGCCTGACCGAGCCGAAGCCGAACGTGTGGTTCG
AGCCCGGGGATCCGGAGGCGGACGTGGCGCAGGGCGTGCGCCTGGACCGCCGCACGCGCATGATGTACGGCGCGCGCCAT
GTCTTCATCAACGGCGAGAGCTACCTGGCCGGCGGGCGGGACGCGACGCTCATGCGGCGCCTGGCCGACCAGCGGAAACT
CTCCGCGCGCGACCTGGCGCGTGCCAGCGAGGATGCGCTGGAGCTGCTGGCATCGTGGTGCGACGCCGGCTGGGTGCAGG
TGGAGGCGGCCGCATAG

Upstream 100 bases:

>100_bases
GTCAAGGCGACCACGCATTGTTGGTTGATTTCCATAGGAGAATTGTCGCAGTTCGTCCACCGGCCGCGCCATCGGCGCGT
GCGCCTTCCGCTCTCTCTCC

Downstream 100 bases:

>100_bases
CTGCTGCCCGTCCCCCTGCGCGGATCAAGAAGGAGGTTGTCCATGGATTTCTCCCCGGTCCTGGCGGGCGAGGCGCCACT
GCCGTCCGGCCGTATCGAGG

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDTHIPLALLGGMTPAQFMRRHWQKKPLLVRQAIAPFVPPVGRQELFALAAQESVESRLVQQKKGAWSLRHGPFARRSLP
PLATPDWTLLVQGVDLHDDAVHALLQQFRFVPQARLDDLMISYATDGGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLAL
KEGIPLKILENFEPEQEFVLEPGDMLYLPPRWAHDGIAEGECMTYSIGFRSPSRTGLAQDLLTRLSDGPDEEGALSPHLY
RDPAQDAADRPGEIPAALLDFARDALARALAEPLAVERALGESLTEPKPNVWFEPGDPEADVAQGVRLDRRTRMMYGARH
VFINGESYLAGGRDATLMRRLADQRKLSARDLARASEDALELLASWCDAGWVQVEAAA

Sequences:

>Translated_378_residues
MDTHIPLALLGGMTPAQFMRRHWQKKPLLVRQAIAPFVPPVGRQELFALAAQESVESRLVQQKKGAWSLRHGPFARRSLP
PLATPDWTLLVQGVDLHDDAVHALLQQFRFVPQARLDDLMISYATDGGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLAL
KEGIPLKILENFEPEQEFVLEPGDMLYLPPRWAHDGIAEGECMTYSIGFRSPSRTGLAQDLLTRLSDGPDEEGALSPHLY
RDPAQDAADRPGEIPAALLDFARDALARALAEPLAVERALGESLTEPKPNVWFEPGDPEADVAQGVRLDRRTRMMYGARH
VFINGESYLAGGRDATLMRRLADQRKLSARDLARASEDALELLASWCDAGWVQVEAAA
>Mature_378_residues
MDTHIPLALLGGMTPAQFMRRHWQKKPLLVRQAIAPFVPPVGRQELFALAAQESVESRLVQQKKGAWSLRHGPFARRSLP
PLATPDWTLLVQGVDLHDDAVHALLQQFRFVPQARLDDLMISYATDGGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLAL
KEGIPLKILENFEPEQEFVLEPGDMLYLPPRWAHDGIAEGECMTYSIGFRSPSRTGLAQDLLTRLSDGPDEEGALSPHLY
RDPAQDAADRPGEIPAALLDFARDALARALAEPLAVERALGESLTEPKPNVWFEPGDPEADVAQGVRLDRRTRMMYGARH
VFINGESYLAGGRDATLMRRLADQRKLSARDLARASEDALELLASWCDAGWVQVEAAA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Homo sapiens, GI106879206, Length=210, Percent_Identity=30, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=33.8709677419355, Blast_Score=199, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42082; Mature: 42082

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTHIPLALLGGMTPAQFMRRHWQKKPLLVRQAIAPFVPPVGRQELFALAAQESVESRLV
CCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QQKKGAWSLRHGPFARRSLPPLATPDWTLLVQGVDLHDDAVHALLQQFRFVPQARLDDLM
HHHCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHE
ISYATDGGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLALKEGIPLKILENFEPEQEFVL
EEEECCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHCCCCHHHHCCCCCCHHHEE
EPGDMLYLPPRWAHDGIAEGECMTYSIGFRSPSRTGLAQDLLTRLSDGPDEEGALSPHLY
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
RDPAQDAADRPGEIPAALLDFARDALARALAEPLAVERALGESLTEPKPNVWFEPGDPEA
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHH
DVAQGVRLDRRTRMMYGARHVFINGESYLAGGRDATLMRRLADQRKLSARDLARASEDAL
HHHHCCHHHHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLASWCDAGWVQVEAAA
HHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MDTHIPLALLGGMTPAQFMRRHWQKKPLLVRQAIAPFVPPVGRQELFALAAQESVESRLV
CCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QQKKGAWSLRHGPFARRSLPPLATPDWTLLVQGVDLHDDAVHALLQQFRFVPQARLDDLM
HHHCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHE
ISYATDGGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLALKEGIPLKILENFEPEQEFVL
EEEECCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHCCCCHHHHCCCCCCHHHEE
EPGDMLYLPPRWAHDGIAEGECMTYSIGFRSPSRTGLAQDLLTRLSDGPDEEGALSPHLY
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
RDPAQDAADRPGEIPAALLDFARDALARALAEPLAVERALGESLTEPKPNVWFEPGDPEA
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHH
DVAQGVRLDRRTRMMYGARHVFINGESYLAGGRDATLMRRLADQRKLSARDLARASEDAL
HHHHCCHHHHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLASWCDAGWVQVEAAA
HHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]