Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is fabD [H]

Identifier: 120609872

GI number: 120609872

Start: 1304957

End: 1305913

Strand: Direct

Name: fabD [H]

Synonym: Aave_1184

Alternate gene names: 120609872

Gene position: 1304957-1305913 (Clockwise)

Preceding gene: 120609871

Following gene: 120609873

Centisome position: 24.38

GC content: 70.01

Gene sequence:

>957_bases
ATGACCACGAAGAACTTCGCATTCGTTTTTCCCGGACAAGGATCGCAATCCGTCGGCATGCTCGACGCCTGGGGTGACCA
TCCCGCCGTGGCCGAAGCCGTCCAGGAAGCCTCCGACGCGCTCGGCGAGGACATCGGCCGCCTGATCCATGAAGGCCCCA
AGGAAGCCCTGGCGCTGACCACCAACACCCAGCCCGTGATGCTGGTCGCCGGCGTGGCGGCCTGGCGCGTCTGGCTCGCG
GAAGGCGGCGCGCAACCCGCCGCGGTGGCCGGCCACTCCCTGGGTGAATATTCCGCCCTGGTGGCCTCCGGCGTGCTCAC
GCTGTCGCAGGCGGCTCGGCTGGTTCGGCTGCGCGCCGCCGCCATGCAGGAAGCCGTGCCCGTGGGCATGGGTGCCATGG
CCGCCATCCTCGGCCTCGAATCGGCCAAGGTGGTGGAAGGCTGCGCCCACGCCACCGCGGCGTTCGGCGCGGGCAGCGCG
GATGTCGTCGAGGCCGTGAATTTCAACGACCCGGCCCAGACCGTCATCGCCGGTACCAAGGCGGGCGTCGAGGAAGCCTG
CGAAATGCTCAAGGCCGCGGGCGCCAAGCGCGCGCTGCCCCTGCCCGTGTCCGCGCCTTTCCACTCCAGCCTCATGAAGC
CGGCTGCCGAGAAGCTGCGCGAGGCACTGGCCGGCCTGTCCCTGACCTCCCCCCGCATTCCCGTGGTCAACAACATCGAC
GTGGCCGTGGAGCGGGGGGCGGATGCGATCCGCGATGCGCTCTACCGCCAGGCCTTCGGCCCCGTGCGGTGGGTGGAGTG
CATCGGTGCGCTCAAGGCGCGGGGTGCCACCCACGTCATCGAGTGCGGCCCTGGCAAGGTGCTCATGGGCATGACCAAGC
GCATCGACGCGACCCTGGTGGGCGGCTCGGTGTACGATCCCGCATCCCTGCAGGAAACCCGCGAACTGCTGGCCTGA

Upstream 100 bases:

>100_bases
GGGGGCTTCACCTGGGGCGCCGTGCTGCTCACGCTCTGAGTGCTGCCGCGGCCTGCGCCGAAGCACGGCCCCGGTGACTC
GTATGACCTGAATTTCCCTC

Downstream 100 bases:

>100_bases
GACGGCTGACCAGAGAGACACCATGACCCTTTCGAATTCCCCTGACAACGCCGCCCGCATCGCCCTGGTGACGGGTGCCT
CCCGCGGCATCGGTGCCGCC

Product: malonyl CoA-acyl carrier protein transacylase

Products: NA

Alternate protein names: MCT [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLA
EGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSA
DVVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID
VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA

Sequences:

>Translated_318_residues
MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLA
EGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSA
DVVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID
VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA
>Mature_317_residues
TTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLAE
GGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSAD
VVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNIDV
AVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA

Specific function: Fatty acid biosynthesis. [C]

COG id: COG0331

COG function: function code I; (acyl-carrier-protein) S-malonyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fabD family [H]

Homologues:

Organism=Homo sapiens, GI51243059, Length=305, Percent_Identity=32.7868852459016, Blast_Score=136, Evalue=3e-32,
Organism=Escherichia coli, GI1787334, Length=313, Percent_Identity=53.0351437699681, Blast_Score=298, Evalue=3e-82,
Organism=Caenorhabditis elegans, GI71984332, Length=266, Percent_Identity=32.3308270676692, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17550940, Length=241, Percent_Identity=29.8755186721992, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24665753, Length=302, Percent_Identity=32.4503311258278, Blast_Score=131, Evalue=5e-31,

Paralogues:

None

Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001227
- InterPro:   IPR014043
- InterPro:   IPR016035
- InterPro:   IPR004410
- InterPro:   IPR016036 [H]

Pfam domain/function: PF00698 Acyl_transf_1 [H]

EC number: =2.3.1.39 [H]

Molecular weight: Translated: 32678; Mature: 32547

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALT
CCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEE
TNTQPVMLVAGVAAWRVWLAEGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAA
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSADVVEAVNFNDPAQTVIAGTK
HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCC
AGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLV
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCEEEE
GGSVYDPASLQETRELLA
CCCCCCCHHHHHHHHHHC
>Mature Secondary Structure 
TTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALT
CCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEE
TNTQPVMLVAGVAAWRVWLAEGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAA
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSADVVEAVNFNDPAQTVIAGTK
HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCC
AGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLV
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCEEEE
GGSVYDPASLQETRELLA
CCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]