Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is ydfH [C]
Identifier: 120609788
GI number: 120609788
Start: 1201620
End: 1202453
Strand: Reverse
Name: ydfH [C]
Synonym: Aave_1096
Alternate gene names: 120609788
Gene position: 1202453-1201620 (Counterclockwise)
Preceding gene: 120609789
Following gene: 120609787
Centisome position: 22.46
GC content: 72.66
Gene sequence:
>834_bases ATGCCCCGCGCCGCCCAGACTCCTGTTCCCGCTCCTGCCTCCCCGCCCACGCCCCACCGCGCATCCACCGCCGCCCCCGC ACCGGCACGCAAGGCGCGTGCGCCCCGGCCTCCCGCACTGGCGCAGCGCGCGGACGCGCCCGCCGCCCCGGAGGCCGCGC AGGTCTCCATCGAAGGCATCGCGCGCGACCTGGCGACCGCGATCGTCGAGAAACGCCTGCCGCCCGGCACCTGGCTGCGC GAGGAAGCGCTGGGGCGCATCTACTCCGTGAGCCGCACCAAGGTGCGCGCCGCGCTGGTCATGCTGGCCAAGGACCGGCT GATTGAGACCATTCCCGACAAGGGCTCGTTCGTGAGCCGGCCCAGCGTGCAGGAGGCGCGCGAGGTCTTCGCCGTGCGCC GCATCCTGGAGAGCGAGGTCGTGCGGCTGTTCGTGGCCCGTGCGAAGCGGGCCGACTACCAGCTGCTGGAGCAGCACATC CGCTTCGAGCGCACGGCGCTCAAGGCCGGCCCCGCCACCGGCAGCGTGCAGGAAAAGCTGCTGGGCGACTTCCACGTCGC GCTGGCCGAGGCGGCGGGCAACCACACGCTGGCCCGGCTGGTCCAGGAGATGGTGGCGCGCAGCTCGCTCATCGCGATGC TCTACCACTCGTCCAACGACGCGCACTGCTCCTCCGGGGAGCATGCCGAGTTCCTGCGCGTGTGCCGCGGCGGCGATGCC GAGGCGGCGGTCGCCTGCATGGTGGACCACCTCGACCGCATCGAGGCCAGCCTGGAACTGGACAGCGAACGCGCCGACCG GCAACTGGACCTGGTCAAGGCCCTGCTGTCCTGA
Upstream 100 bases:
>100_bases CGGCACTGCGGCGCGCCTGATCGCGGCGGGGCCGCGGCCGATGCCGCCCCGCGGCGGTGCCTTTGCGCGGGCAGCCACCG CTTGCCGCGACAATCCCGCC
Downstream 100 bases:
>100_bases CCCTCGCGAGACATCCGTGGCCCGTCCCGCGTGGGTCGAATCGCTGCCCACCGTGGGTGCGGTGGCGGCCACCGGCATCC GCATCCCGGGCGCGGTGATT
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein; Transcriptional Regulator Protein GntR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; FCD Domain Protein; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Bacterial Regulatory Protein; GntR-Family Protein Transcriptional Regulator
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLR EEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHI RFERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS
Sequences:
>Translated_277_residues MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLR EEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHI RFERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS >Mature_276_residues PRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLRE EALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIR FERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDAE AAVACMVDHLDRIEASLELDSERADRQLDLVKALLS
Specific function: Unknown
COG id: COG1802
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29986; Mature: 29854
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHH ARDLATAIVEKRLPPGTWLREEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIRFERTALKAGPATGSVQEKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCH EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC >Mature Secondary Structure PRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGI CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHH ARDLATAIVEKRLPPGTWLREEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIRFERTALKAGPATGSVQEKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCH EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA