Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is galE [H]
Identifier: 120609737
GI number: 120609737
Start: 1148681
End: 1149697
Strand: Direct
Name: galE [H]
Synonym: Aave_1044
Alternate gene names: 120609737
Gene position: 1148681-1149697 (Clockwise)
Preceding gene: 120609727
Following gene: 120609739
Centisome position: 21.46
GC content: 72.07
Gene sequence:
>1017_bases GTGATACTTGTAACGGGCGGGGCCGGATTCATCGGCTCGCATACCTGCGTGGCACTGGCCGAGGCCGGGCTGCCATTTCT CATCCTGGACAACTTCTGCAACAGCCGCCGCTCGGTACTGGAGCGCGTGGGCCGCATCACCGGCCGCGTGCCCGACCTGG TCGAGGGCGACGTGCGGGACGAGGGCCTGCTGGCGCGGATCTTCGCGGAGCATTCCATCGATGCGGTGATCCATTTCGCC GCGCTCAAGGCGGTGGGCGAATCGGTGCGGGAGCCGCTGTCGTACTACGACAACAACGTGGCCGGCACGGTGGCGCTGCT GCGCGCGATGCGCAAGGCGGACGTCCGCACCCTGGTGTTCTCCTCGTCCGCGACGGTGTACGGCGAGCCGGCCTCCCTGC CCATCCGCGAGGATTTCCCCCTCTCGGCCACCAACCCGTACGGCCAGAGCAAGCTCATGATGGAGCAGGTGCTGGCCGAC GTGGACGCCTCCGAGCCCGGCCGCTGGCGCATCGCCCGGCTGCGCTACTTCAACCCCGTGGGCGCGCACGAAAGCGGCCT CATCGGCGAAGACCCGCAGGACGTTCCCAACAACCTGCTGCCCTACGTGGCCCAGGTGGCCGTGGGGCTGCGCGAGCGCC TGAGCGTGTATGGCGGCGACTACCCCACGCCGGACGGCACGGGCGTGCGCGACTACATCCACGTGTGCGACCTGGCCGAT GGCCACGTGGCGGCGCTGCGCTACCTGCGCGCGCACCCCGGCCTGCTCACGGTGAACCTGGGCACGGGGCGGCCCGTGTC GGTGCTGGAGATGGTGCGCGGCTTCGAGGCCGCGAGCGGCCGGCCGGTGCCCTACCAGGTGGTGGCGCGGCGGCCCGGGG ACGTGGCCGCCTGCTGGGCCGACCCGGGGCTGGCCGAACGGCTGCTGGGCTGGAAGGCCCGCCACGGCCTCGACCGGATG TGCGCCGACGCCTGGCGCTGGCAGGACGGCGTGGCCCGCGGCCTGCAGGCGGGCTGA
Upstream 100 bases:
>100_bases TTCCGCCAGGGGCCCGGGCTGGTGCGCGGACCGCATCCCGGGGTTGGCCTGCCGGTATTACGCAGGCCAGAATAGGGTGG ATTCAACGGGAGCAGATCGC
Downstream 100 bases:
>100_bases AAAAAAGCAAGGGGCCCGGCGCGCTGGCGCAGGGCCCCTTGCGGCGGGCGTGGCGGTCAGGCCGCCGTGGCGGTGCCCGG AGCGCCTGCGGGGGCGTCGT
Product: UDP-galactose 4-epimerase
Products: NA
Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MILVTGGAGFIGSHTCVALAEAGLPFLILDNFCNSRRSVLERVGRITGRVPDLVEGDVRDEGLLARIFAEHSIDAVIHFA ALKAVGESVREPLSYYDNNVAGTVALLRAMRKADVRTLVFSSSATVYGEPASLPIREDFPLSATNPYGQSKLMMEQVLAD VDASEPGRWRIARLRYFNPVGAHESGLIGEDPQDVPNNLLPYVAQVAVGLRERLSVYGGDYPTPDGTGVRDYIHVCDLAD GHVAALRYLRAHPGLLTVNLGTGRPVSVLEMVRGFEAASGRPVPYQVVARRPGDVAACWADPGLAERLLGWKARHGLDRM CADAWRWQDGVARGLQAG
Sequences:
>Translated_338_residues MILVTGGAGFIGSHTCVALAEAGLPFLILDNFCNSRRSVLERVGRITGRVPDLVEGDVRDEGLLARIFAEHSIDAVIHFA ALKAVGESVREPLSYYDNNVAGTVALLRAMRKADVRTLVFSSSATVYGEPASLPIREDFPLSATNPYGQSKLMMEQVLAD VDASEPGRWRIARLRYFNPVGAHESGLIGEDPQDVPNNLLPYVAQVAVGLRERLSVYGGDYPTPDGTGVRDYIHVCDLAD GHVAALRYLRAHPGLLTVNLGTGRPVSVLEMVRGFEAASGRPVPYQVVARRPGDVAACWADPGLAERLLGWKARHGLDRM CADAWRWQDGVARGLQAG >Mature_338_residues MILVTGGAGFIGSHTCVALAEAGLPFLILDNFCNSRRSVLERVGRITGRVPDLVEGDVRDEGLLARIFAEHSIDAVIHFA ALKAVGESVREPLSYYDNNVAGTVALLRAMRKADVRTLVFSSSATVYGEPASLPIREDFPLSATNPYGQSKLMMEQVLAD VDASEPGRWRIARLRYFNPVGAHESGLIGEDPQDVPNNLLPYVAQVAVGLRERLSVYGGDYPTPDGTGVRDYIHVCDLAD GHVAALRYLRAHPGLLTVNLGTGRPVSVLEMVRGFEAASGRPVPYQVVARRPGDVAACWADPGLAERLLGWKARHGLDRM CADAWRWQDGVARGLQAG
Specific function: Galactose metabolism; third step. [C]
COG id: COG1087
COG function: function code M; UDP-glucose 4-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sugar epimerase family [H]
Homologues:
Organism=Homo sapiens, GI56237023, Length=334, Percent_Identity=56.8862275449102, Blast_Score=380, Evalue=1e-106, Organism=Homo sapiens, GI56118217, Length=334, Percent_Identity=56.8862275449102, Blast_Score=380, Evalue=1e-106, Organism=Homo sapiens, GI189083684, Length=334, Percent_Identity=56.8862275449102, Blast_Score=380, Evalue=1e-106, Organism=Homo sapiens, GI7657641, Length=276, Percent_Identity=26.8115942028986, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI42516563, Length=316, Percent_Identity=26.8987341772152, Blast_Score=84, Evalue=2e-16, Organism=Escherichia coli, GI1786974, Length=328, Percent_Identity=57.3170731707317, Blast_Score=394, Evalue=1e-111, Organism=Escherichia coli, GI48994969, Length=386, Percent_Identity=25.9067357512953, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788353, Length=380, Percent_Identity=25.2631578947368, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982038, Length=348, Percent_Identity=50.5747126436782, Blast_Score=347, Evalue=7e-96, Organism=Caenorhabditis elegans, GI71982035, Length=346, Percent_Identity=50.8670520231214, Blast_Score=346, Evalue=8e-96, Organism=Caenorhabditis elegans, GI17539532, Length=268, Percent_Identity=26.4925373134328, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6319493, Length=344, Percent_Identity=49.7093023255814, Blast_Score=332, Evalue=6e-92, Organism=Drosophila melanogaster, GI19923002, Length=336, Percent_Identity=55.6547619047619, Blast_Score=373, Evalue=1e-104, Organism=Drosophila melanogaster, GI21356223, Length=324, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR005886 - InterPro: IPR016040 - InterPro: IPR008089 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: =5.1.3.2 [H]
Molecular weight: Translated: 36566; Mature: 36566
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILVTGGAGFIGSHTCVALAEAGLPFLILDNFCNSRRSVLERVGRITGRVPDLVEGDVRD CEEEECCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC EGLLARIFAEHSIDAVIHFAALKAVGESVREPLSYYDNNVAGTVALLRAMRKADVRTLVF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEE SSSATVYGEPASLPIREDFPLSATNPYGQSKLMMEQVLADVDASEPGRWRIARLRYFNPV ECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC GAHESGLIGEDPQDVPNNLLPYVAQVAVGLRERLSVYGGDYPTPDGTGVRDYIHVCDLAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC GHVAALRYLRAHPGLLTVNLGTGRPVSVLEMVRGFEAASGRPVPYQVVARRPGDVAACWA CHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHEEECCCCCEEEEEC DPGLAERLLGWKARHGLDRMCADAWRWQDGVARGLQAG CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MILVTGGAGFIGSHTCVALAEAGLPFLILDNFCNSRRSVLERVGRITGRVPDLVEGDVRD CEEEECCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC EGLLARIFAEHSIDAVIHFAALKAVGESVREPLSYYDNNVAGTVALLRAMRKADVRTLVF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEE SSSATVYGEPASLPIREDFPLSATNPYGQSKLMMEQVLADVDASEPGRWRIARLRYFNPV ECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC GAHESGLIGEDPQDVPNNLLPYVAQVAVGLRERLSVYGGDYPTPDGTGVRDYIHVCDLAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC GHVAALRYLRAHPGLLTVNLGTGRPVSVLEMVRGFEAASGRPVPYQVVARRPGDVAACWA CHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHEEECCCCCEEEEEC DPGLAERLLGWKARHGLDRMCADAWRWQDGVARGLQAG CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8978088; 8969509; 9384377 [H]