Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is gsiB [H]
Identifier: 120609630
GI number: 120609630
Start: 1017943
End: 1019523
Strand: Direct
Name: gsiB [H]
Synonym: Aave_0936
Alternate gene names: 120609630
Gene position: 1017943-1019523 (Clockwise)
Preceding gene: 120609629
Following gene: 120609631
Centisome position: 19.02
GC content: 66.54
Gene sequence:
>1581_bases ATGAATTTCCCACGCACGGCATTGCGCGCCGCCTTCGGCGCCTCCCTGATCGCGGCGGCCTGCATGGCGGGCGCGCAGAC CATCCGGGTCGCCAACCAGGGCGACGCGCTGTCGATGGATCCGCATTCCCTGAACGAGAGCCTGCAGCTCAGCGTGACCG GCAATATCTATGAGCCGCTCGTGGGCCGCAACAAGGACCTGAGCCTGGCGCCGGCGCTGGCCACGCGCTGGGCACAGCTC TCTCCCACGGTGTGGCGCTTCGAACTGCGGCGTGGCGTGCTTTTCCACGACGGCACTCCGTTCACCGCGGACGACGTGCT GTTTTCGCTGGCACGCACGCAGGCCGGGAGTTCGGACATGAAGACGTACACCAACGACTTCAAGGAAGTGCGCAAGGTGG ACGACTACACCGTCGAGATCGAGACCAAAGCTCCGTACCCCATCCTGCCCGATGTGCTCACGCTCGTGTACATGATGTCG CGCAAGTGGTGCGAGACGAACCACGCCACGGAGCCGGTGGATCGGCGCAGGGGCGTGGAGAACGCGGCGTCGTTCCGGGC CAACGGCACGGGGCCGTTCCGGCTGCGCGAGCGCCAGCCCGGCGTGCGTACCGTGTTCACGCGCAACGCGCAGTACTGGG GGGCCATCGAAGGCAACGTGTCCGAGGTGGTGTTCACCCCCATCGGCAACGACGCCACCCGCGTCGCGGCGCTGCTGTCG GGCCAGGTGGACGTCATGGAGCCCGTGCCGGTGCAGGACATCGAGCGCGTGAACACGAGTCCGCTCACGCGCGCAGTGAC CGGGCCCGAGCTGCGCACCATCTTCCTGGGCATGGACCAGAAGCGCGACGAGCTGCTGTATTCCAGCGTGAAGGGCAAAA ACCCGTTCAAGGACAAGCGCGTGCGCCAGGCCTTCTACCAGGCCATCGACATCGAGGGCATCCGCAAGACGGTGATGCGC GGCGCCTCCAATCCGTCGGCGCTGCTGGTGGGGCCGGGCGTGAACGGTTTCCAGGCGGATATCAAGCGCCTTCCCTACGA CACGGATGCCGCGAAGAAGCTGCTGGCCGAAGCCGGCTACCCCAACGGCTTCGAGGTGGGCATGAACTGCCCCAACGACC GCTACGTGAATGACGCGCGCATCTGCCAGGCAGTGGCCGCCAACCTCGCGCGCATCGGCGTGAAGGTGAACCTGCAGGCG GAAACCAAGGGCACGTACTTCCCCAGGGTGCTGCGGCGGGATACCAGCTTCTACATGCTGGGCTGGATGCCCGCCACCTA CGACGCGCACAACGCGATGACTGCGCTGATGGCCTGCGTGGACGACAAGGGCGCCGGGCAGTTCAACCTGGGCGGGTACT GCAATCCCAAGGTGGACCAGCTCACGCGGCAGGTGCAGTCGGAGGTCGACAAGGCCCGGCGCGACGCGATGATCCGCGAA GCCTTCGAGATCCATGCGGCCGACGTGGGCCACATCCCGCTGCACCAGCAGGCCCTGGCCTGGGGCGTGTCGCGCAAGGT GGCGCTGGTGCAGATGGCCGACAACTTCATGCCGTTCAAGTGGATGAGCCTCGCGAAGTGA
Upstream 100 bases:
>100_bases CCGGTACGACTTCAACGACGAGATCCTGCCCCTGGGCGCCGCGCTGCACGCGGGCCTGGTCGAGCAGGCCATGCCGCTGG CAGCGGTCTGAGGTATGACG
Downstream 100 bases:
>100_bases TGCCCTGATCCGTTCCGTCCGCGTGGAGATGCCGTTCCGCTCCACGCTTTTCCCGAATCGCACGATGAAAAAAACGCTTT TCCGATGGTTCGACAGCGAT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MNFPRTALRAAFGASLIAAACMAGAQTIRVANQGDALSMDPHSLNESLQLSVTGNIYEPLVGRNKDLSLAPALATRWAQL SPTVWRFELRRGVLFHDGTPFTADDVLFSLARTQAGSSDMKTYTNDFKEVRKVDDYTVEIETKAPYPILPDVLTLVYMMS RKWCETNHATEPVDRRRGVENAASFRANGTGPFRLRERQPGVRTVFTRNAQYWGAIEGNVSEVVFTPIGNDATRVAALLS GQVDVMEPVPVQDIERVNTSPLTRAVTGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKRVRQAFYQAIDIEGIRKTVMR GASNPSALLVGPGVNGFQADIKRLPYDTDAAKKLLAEAGYPNGFEVGMNCPNDRYVNDARICQAVAANLARIGVKVNLQA ETKGTYFPRVLRRDTSFYMLGWMPATYDAHNAMTALMACVDDKGAGQFNLGGYCNPKVDQLTRQVQSEVDKARRDAMIRE AFEIHAADVGHIPLHQQALAWGVSRKVALVQMADNFMPFKWMSLAK
Sequences:
>Translated_526_residues MNFPRTALRAAFGASLIAAACMAGAQTIRVANQGDALSMDPHSLNESLQLSVTGNIYEPLVGRNKDLSLAPALATRWAQL SPTVWRFELRRGVLFHDGTPFTADDVLFSLARTQAGSSDMKTYTNDFKEVRKVDDYTVEIETKAPYPILPDVLTLVYMMS RKWCETNHATEPVDRRRGVENAASFRANGTGPFRLRERQPGVRTVFTRNAQYWGAIEGNVSEVVFTPIGNDATRVAALLS GQVDVMEPVPVQDIERVNTSPLTRAVTGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKRVRQAFYQAIDIEGIRKTVMR GASNPSALLVGPGVNGFQADIKRLPYDTDAAKKLLAEAGYPNGFEVGMNCPNDRYVNDARICQAVAANLARIGVKVNLQA ETKGTYFPRVLRRDTSFYMLGWMPATYDAHNAMTALMACVDDKGAGQFNLGGYCNPKVDQLTRQVQSEVDKARRDAMIRE AFEIHAADVGHIPLHQQALAWGVSRKVALVQMADNFMPFKWMSLAK >Mature_526_residues MNFPRTALRAAFGASLIAAACMAGAQTIRVANQGDALSMDPHSLNESLQLSVTGNIYEPLVGRNKDLSLAPALATRWAQL SPTVWRFELRRGVLFHDGTPFTADDVLFSLARTQAGSSDMKTYTNDFKEVRKVDDYTVEIETKAPYPILPDVLTLVYMMS RKWCETNHATEPVDRRRGVENAASFRANGTGPFRLRERQPGVRTVFTRNAQYWGAIEGNVSEVVFTPIGNDATRVAALLS GQVDVMEPVPVQDIERVNTSPLTRAVTGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKRVRQAFYQAIDIEGIRKTVMR GASNPSALLVGPGVNGFQADIKRLPYDTDAAKKLLAEAGYPNGFEVGMNCPNDRYVNDARICQAVAANLARIGVKVNLQA ETKGTYFPRVLRRDTSFYMLGWMPATYDAHNAMTALMACVDDKGAGQFNLGGYCNPKVDQLTRQVQSEVDKARRDAMIRE AFEIHAADVGHIPLHQQALAWGVSRKVALVQMADNFMPFKWMSLAK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=514, Percent_Identity=24.7081712062257, Blast_Score=145, Evalue=8e-36, Organism=Escherichia coli, GI1789966, Length=526, Percent_Identity=24.7148288973384, Blast_Score=138, Evalue=8e-34, Organism=Escherichia coli, GI1787495, Length=522, Percent_Identity=22.9885057471264, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI87081878, Length=523, Percent_Identity=22.5621414913958, Blast_Score=108, Evalue=7e-25, Organism=Escherichia coli, GI1789397, Length=519, Percent_Identity=23.5067437379576, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1787762, Length=518, Percent_Identity=22.5868725868726, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1789887, Length=465, Percent_Identity=24.0860215053763, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1787551, Length=455, Percent_Identity=23.7362637362637, Blast_Score=86, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 58280; Mature: 58280
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFPRTALRAAFGASLIAAACMAGAQTIRVANQGDALSMDPHSLNESLQLSVTGNIYEPL CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCEEEEEECCHHHHH VGRNKDLSLAPALATRWAQLSPTVWRFELRRGVLFHDGTPFTADDVLFSLARTQAGSSDM CCCCCCCCHHHHHHHHHHHCCCHHEEHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCHH KTYTNDFKEVRKVDDYTVEIETKAPYPILPDVLTLVYMMSRKWCETNHATEPVDRRRGVE HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCH NAASFRANGTGPFRLRERQPGVRTVFTRNAQYWGAIEGNVSEVVFTPIGNDATRVAALLS HHHHCCCCCCCCEEECCCCCCCEEEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHC GQVDVMEPVPVQDIERVNTSPLTRAVTGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKR CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHH VRQAFYQAIDIEGIRKTVMRGASNPSALLVGPGVNGFQADIKRLPYDTDAAKKLLAEAGY HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHCCC PNGFEVGMNCPNDRYVNDARICQAVAANLARIGVKVNLQAETKGTYFPRVLRRDTSFYML CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHCCCCEEEE GWMPATYDAHNAMTALMACVDDKGAGQFNLGGYCNPKVDQLTRQVQSEVDKARRDAMIRE ECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFEIHAADVGHIPLHQQALAWGVSRKVALVQMADNFMPFKWMSLAK HHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEHHCCCCCCHHHHHCC >Mature Secondary Structure MNFPRTALRAAFGASLIAAACMAGAQTIRVANQGDALSMDPHSLNESLQLSVTGNIYEPL CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCEEEEEECCHHHHH VGRNKDLSLAPALATRWAQLSPTVWRFELRRGVLFHDGTPFTADDVLFSLARTQAGSSDM CCCCCCCCHHHHHHHHHHHCCCHHEEHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCHH KTYTNDFKEVRKVDDYTVEIETKAPYPILPDVLTLVYMMSRKWCETNHATEPVDRRRGVE HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCH NAASFRANGTGPFRLRERQPGVRTVFTRNAQYWGAIEGNVSEVVFTPIGNDATRVAALLS HHHHCCCCCCCCEEECCCCCCCEEEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHC GQVDVMEPVPVQDIERVNTSPLTRAVTGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKR CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHH VRQAFYQAIDIEGIRKTVMRGASNPSALLVGPGVNGFQADIKRLPYDTDAAKKLLAEAGY HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHCCC PNGFEVGMNCPNDRYVNDARICQAVAANLARIGVKVNLQAETKGTYFPRVLRRDTSFYML CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHCCCCEEEE GWMPATYDAHNAMTALMACVDDKGAGQFNLGGYCNPKVDQLTRQVQSEVDKARRDAMIRE ECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFEIHAADVGHIPLHQQALAWGVSRKVALVQMADNFMPFKWMSLAK HHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEHHCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA