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The map label for this gene is ytbD [H]

Identifier: 120608989

GI number: 120608989

Start: 317959

End: 319161

Strand: Direct

Name: ytbD [H]

Synonym: Aave_0286

Alternate gene names: 120608989

Gene position: 317959-319161 (Clockwise)

Preceding gene: 120608986

Following gene: 120608990

Centisome position: 5.94

GC content: 73.9

Gene sequence:

>1203_bases
ATGCCCATTGCCCTGTTCGCGCTGACGCTCGGCGCCTTCGCCATCGGCACGACGGAATTCGTCATCGTCGGCCTGCTGCC
CACCGTGGCGGCGGACCTCGGCATCGGCCTGCCCTCGGCCGGCCTGCTCGTCAGCCTGTATGCGCTGGGCGTCGCCGTCG
GCGCGCCGGTGCTCACCGCGCTCACCGGCCGGCTGCCGCGCAAGGCCCTGCTGCTCGCGCTCATGGCGCTGTTCACCGCC
GGCAACCTGCTGGCCTGGCAGGCCCCGGGCTACGGCACGCTGGTGGCCGCGCGCGTGCTCACCGGGCTCGCGCACGGCGT
GTTCTTCTCGATCGGCTCGACCATCGCCACCGGCCTGGTGCCGCGCGAGAAGGCCGCCAGCGCCATCGCCACGCTGTTCG
CGGGGCTCACGTTGGCGCTGGTCACCGGCGTGCCGCTCGGCACCTTCATCGGCCAGCACTTCGGCTGGCGCGAAACCTTC
CTCGCCGTGGCGGGGCTCGGCATGCTGGCTTTCGCGGGCAGCGCGCTTTTCGTGCCGCGGCGCATCGCGCACGTTCCGCC
GGCCTCGCTCCTGCAGCAGGCCCGCGTGCTGGCCGAGCCGCGGCTGCTGCTGGTGTATGCCAAGACGGCCATCGGCTACG
GCGGCACCTTCATCCCGTTCACCTTCCTCGCGCCCATCCTCACCGGCGTGTCGGGTTTCAGCGAAAGCGCGGTGGGCTGG
GTGATGCTGGTGTACGGTGTCTCGGTGGCCGCGGGCAACCTCTGGGGCGGCCGGCTGGCCGACCGCCTGGGTCCCGTCGC
CGCGCTGCGCATCATCTTCGCGCTGCTGGCCGCCGTGCTGCTGCTCCTGCAGTTCACCGCGCCCCATCCCTGGCTGGCCG
TGGGCACGGTGCTGCTCTGGGGCGCAGTGGCCTTCGGCAACGTGCCGGGCCTGCAGCTGTACGTGGTGCGCCAGGCCGAG
CGCGTCGCGCCGCAGGCCGTGGACGTGGCCTCGGGCCTGAACATCGCCGCGTTCAACCTGGGCATCGCCGGCGCGGCGTG
GGCCGGGGGGCTGATCGTGACGCACCTGGGCCTCATGCACACGCCCTGGATCGGCGCGGTCGTGGTGCTGGGTGCGCTGG
CGCTCACCCAGGCCAGCGGCGTGCTCGATGCGCGCGGCGGGGCCGCTGCGCGCGGGGGCCGTCCGGCGGCCGCGGGCCAC
TGA

Upstream 100 bases:

>100_bases
TGACTCTAAGGCAAATATATTCTGCCGATCACAGGCTTTTTCCGCAAAGGTGAAGCACCCACACTCCTGGCATCGATCTG
TGATCCCAAGGAGTGCTTCC

Downstream 100 bases:

>100_bases
GGCGTGGGGCTGGCTCGGGCGCGCTTCTCCCTTTCCACCCACCCATCCATCCATTCATTCATTCACCGACAAGGAGTTTT
CCATGCAGGCATCCGCTTCC

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MPIALFALTLGAFAIGTTEFVIVGLLPTVAADLGIGLPSAGLLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTA
GNLLAWQAPGYGTLVAARVLTGLAHGVFFSIGSTIATGLVPREKAASAIATLFAGLTLALVTGVPLGTFIGQHFGWRETF
LAVAGLGMLAFAGSALFVPRRIAHVPPASLLQQARVLAEPRLLLVYAKTAIGYGGTFIPFTFLAPILTGVSGFSESAVGW
VMLVYGVSVAAGNLWGGRLADRLGPVAALRIIFALLAAVLLLLQFTAPHPWLAVGTVLLWGAVAFGNVPGLQLYVVRQAE
RVAPQAVDVASGLNIAAFNLGIAGAAWAGGLIVTHLGLMHTPWIGAVVVLGALALTQASGVLDARGGAAARGGRPAAAGH

Sequences:

>Translated_400_residues
MPIALFALTLGAFAIGTTEFVIVGLLPTVAADLGIGLPSAGLLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTA
GNLLAWQAPGYGTLVAARVLTGLAHGVFFSIGSTIATGLVPREKAASAIATLFAGLTLALVTGVPLGTFIGQHFGWRETF
LAVAGLGMLAFAGSALFVPRRIAHVPPASLLQQARVLAEPRLLLVYAKTAIGYGGTFIPFTFLAPILTGVSGFSESAVGW
VMLVYGVSVAAGNLWGGRLADRLGPVAALRIIFALLAAVLLLLQFTAPHPWLAVGTVLLWGAVAFGNVPGLQLYVVRQAE
RVAPQAVDVASGLNIAAFNLGIAGAAWAGGLIVTHLGLMHTPWIGAVVVLGALALTQASGVLDARGGAAARGGRPAAAGH
>Mature_399_residues
PIALFALTLGAFAIGTTEFVIVGLLPTVAADLGIGLPSAGLLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTAG
NLLAWQAPGYGTLVAARVLTGLAHGVFFSIGSTIATGLVPREKAASAIATLFAGLTLALVTGVPLGTFIGQHFGWRETFL
AVAGLGMLAFAGSALFVPRRIAHVPPASLLQQARVLAEPRLLLVYAKTAIGYGGTFIPFTFLAPILTGVSGFSESAVGWV
MLVYGVSVAAGNLWGGRLADRLGPVAALRIIFALLAAVLLLLQFTAPHPWLAVGTVLLWGAVAFGNVPGLQLYVVRQAER
VAPQAVDVASGLNIAAFNLGIAGAAWAGGLIVTHLGLMHTPWIGAVVVLGALALTQASGVLDARGGAAARGGRPAAAGH

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=365, Percent_Identity=41.3698630136986, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=32.1329639889197, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787808, Length=367, Percent_Identity=28.8828337874659, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI145693198, Length=363, Percent_Identity=25.8953168044077, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40541; Mature: 40409

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALFALTLGAFAIGTTEFVIVGLLPTVAADLGIGLPSAGLLVSLYALGVAVGAPVLTA
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGRLPRKALLLALMALFTAGNLLAWQAPGYGTLVAARVLTGLAHGVFFSIGSTIATGLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PREKAASAIATLFAGLTLALVTGVPLGTFIGQHFGWRETFLAVAGLGMLAFAGSALFVPR
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
RIAHVPPASLLQQARVLAEPRLLLVYAKTAIGYGGTFIPFTFLAPILTGVSGFSESAVGW
HHHCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VMLVYGVSVAAGNLWGGRLADRLGPVAALRIIFALLAAVLLLLQFTAPHPWLAVGTVLLW
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
GAVAFGNVPGLQLYVVRQAERVAPQAVDVASGLNIAAFNLGIAGAAWAGGLIVTHLGLMH
HHHHHCCCCCEEEEEEEHHHHHCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
TPWIGAVVVLGALALTQASGVLDARGGAAARGGRPAAAGH
CCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIALFALTLGAFAIGTTEFVIVGLLPTVAADLGIGLPSAGLLVSLYALGVAVGAPVLTA
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGRLPRKALLLALMALFTAGNLLAWQAPGYGTLVAARVLTGLAHGVFFSIGSTIATGLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PREKAASAIATLFAGLTLALVTGVPLGTFIGQHFGWRETFLAVAGLGMLAFAGSALFVPR
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
RIAHVPPASLLQQARVLAEPRLLLVYAKTAIGYGGTFIPFTFLAPILTGVSGFSESAVGW
HHHCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VMLVYGVSVAAGNLWGGRLADRLGPVAALRIIFALLAAVLLLLQFTAPHPWLAVGTVLLW
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
GAVAFGNVPGLQLYVVRQAERVAPQAVDVASGLNIAAFNLGIAGAAWAGGLIVTHLGLMH
HHHHHCCCCCEEEEEEEHHHHHCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
TPWIGAVVVLGALALTQASGVLDARGGAAARGGRPAAAGH
CCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]