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The map label for this gene is rnk [H]

Identifier: 120608986

GI number: 120608986

Start: 315057

End: 315968

Strand: Direct

Name: rnk [H]

Synonym: Aave_0283

Alternate gene names: 120608986

Gene position: 315057-315968 (Clockwise)

Preceding gene: 120608983

Following gene: 120608989

Centisome position: 5.89

GC content: 68.2

Gene sequence:

>912_bases
ATGAACAAGCCTTTCATTTCCCTGTGCCCGGAGATCACCCGGGCCCACGCGCTCCTGCTGATGGACTGGCTGGAAGACGA
GGGCGTGACCCGCTACCTGAGCGATGCGCGCGATGTCTCCCGGTCCATCGGGCAGGTGGTCGGCCGGGTCCAGCTGCCGG
TGCTCACGCATCTGTTCAACCAGGGCGGCCGGTTCTTCATGGCCTGCGACCGGCACGACATGCCCGTGGGCTTCGTCCGC
CTTGTCAAGGACGGCCCCGACTGCGAGATGGTCCTGGCCATCGGCGACCGCGCCAACTGGGGGCGCCGGCTCGGGGCCAG
CGCGATCCGCGAAGGCATGAAGCTCGCGTTCTTCGACATGCGGGCCGAAAGGCTCATCGCCAAAATCCATCCGGACAACG
CGCGGTCGCTGAAGGCTTTCCTGCGCAGCGGATTCGCGCTGCACAGCGAAGGGCCTTCGGTGACGTCCCTGGCCATGGGC
GCGGACCGCTATCTCCGGCTGCTGCGCGAACGCCCCGCGGCGGGCGCCCCGGCCATCCACGTCACCGAGATCGACGAAGC
CCGGCTCCGGCAGCTCGTCGCGTTCCACCAGGACCCGGAGATATTCGAGCTGGAGCACGAGATCGAGCGGGCCACGGTCG
TCGATCCGCGGCAGGTGGCGGAGGACGTCGTCACGATGAATTCCCGGGCCCTGCTGGAGGTGGACAACGAAACGGTGGAA
GTGGCGCTGGTCTATCCGCAGGATGCGGACGAGGCCGCGGGCAGGCATTCCGTCTGCTCCGGCCTGGGCACGGCGATCCT
GGGCTACCGGGAGGGCGATGCCTTCCGCTGGCGGATCGCGGACCGTACGCGCCGCATCCGGGTGCGGAAAGTGCTCTATC
AGCCGGAAGCCCGGGGCGATTTCCACCTGTAG

Upstream 100 bases:

>100_bases
GCCCACGCAGCGCCCTAGAATCCCCCCTTTCCCGAAAGAACCGCCATGCCCCGGGGCCATGGAAGGCTTTCATTCATTCT
CGCGACCCGATGGGGTGAAG

Downstream 100 bases:

>100_bases
GCCCGCTGCGGCACCGATGGCGCCGGCCTGCTGGCTCAGCGGGCGGAAGCCGGCTTTCCGGGCCCAGGCTGGAGCCGCGA
TGCCAGCAGGTCGGCCGTGT

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNKPFISLCPEITRAHALLLMDWLEDEGVTRYLSDARDVSRSIGQVVGRVQLPVLTHLFNQGGRFFMACDRHDMPVGFVR
LVKDGPDCEMVLAIGDRANWGRRLGASAIREGMKLAFFDMRAERLIAKIHPDNARSLKAFLRSGFALHSEGPSVTSLAMG
ADRYLRLLRERPAAGAPAIHVTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALLEVDNETVE
VALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLYQPEARGDFHL

Sequences:

>Translated_303_residues
MNKPFISLCPEITRAHALLLMDWLEDEGVTRYLSDARDVSRSIGQVVGRVQLPVLTHLFNQGGRFFMACDRHDMPVGFVR
LVKDGPDCEMVLAIGDRANWGRRLGASAIREGMKLAFFDMRAERLIAKIHPDNARSLKAFLRSGFALHSEGPSVTSLAMG
ADRYLRLLRERPAAGAPAIHVTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALLEVDNETVE
VALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLYQPEARGDFHL
>Mature_303_residues
MNKPFISLCPEITRAHALLLMDWLEDEGVTRYLSDARDVSRSIGQVVGRVQLPVLTHLFNQGGRFFMACDRHDMPVGFVR
LVKDGPDCEMVLAIGDRANWGRRLGASAIREGMKLAFFDMRAERLIAKIHPDNARSLKAFLRSGFALHSEGPSVTSLAMG
ADRYLRLLRERPAAGAPAIHVTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALLEVDNETVE
VALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLYQPEARGDFHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=133, Percent_Identity=33.8345864661654, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 34109; Mature: 34109

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPFISLCPEITRAHALLLMDWLEDEGVTRYLSDARDVSRSIGQVVGRVQLPVLTHLFN
CCCCHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGGRFFMACDRHDMPVGFVRLVKDGPDCEMVLAIGDRANWGRRLGASAIREGMKLAFFDM
CCCCEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCCCHHHHHCHHHHHCCCCEEHHHH
RAERLIAKIHPDNARSLKAFLRSGFALHSEGPSVTSLAMGADRYLRLLRERPAAGAPAIH
HHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHCHHHHHHHHHHCCCCCCCEEE
VTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALLEVDNETVE
EEECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCEEE
VALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLYQPEARGD
EEEECCCCCHHHCCHHHHHHHHHHHHEEEECCCEEEEEECHHHHHHHHHHHHCCCCCCCC
FHL
CCC
>Mature Secondary Structure
MNKPFISLCPEITRAHALLLMDWLEDEGVTRYLSDARDVSRSIGQVVGRVQLPVLTHLFN
CCCCHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGGRFFMACDRHDMPVGFVRLVKDGPDCEMVLAIGDRANWGRRLGASAIREGMKLAFFDM
CCCCEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCCCHHHHHCHHHHHCCCCEEHHHH
RAERLIAKIHPDNARSLKAFLRSGFALHSEGPSVTSLAMGADRYLRLLRERPAAGAPAIH
HHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHCHHHHHHHHHHCCCCCCCEEE
VTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALLEVDNETVE
EEECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCEEE
VALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLYQPEARGD
EEEECCCCCHHHCCHHHHHHHHHHHHEEEECCCEEEEEECHHHHHHHHHHHHCCCCCCCC
FHL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]