| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is metH [H]
Identifier: 120608921
GI number: 120608921
Start: 236529
End: 239252
Strand: Direct
Name: metH [H]
Synonym: Aave_0214
Alternate gene names: 120608921
Gene position: 236529-239252 (Clockwise)
Preceding gene: 120608920
Following gene: 120608922
Centisome position: 4.42
GC content: 67.07
Gene sequence:
>2724_bases ATGTCCGCCCCCCATTCCCTTCCTCCCATGAAGCTGTCCGGCCTGGAGCCGGTTTCCATCGGCGAGGGCACGCTGTTCGT CAACATCGGCGAGCGCACCAACGTGACGGGCTCCAAGGCCTTCGCGCGCATGATCCTCAACGGCCAGTACGAAGAGGCCC TGGCCGTGGCGCGCCAGCAGGTGGAGAACGGCGCCCAGGTCATCGACATCAACATGGACGAGGCCATGCTCGACAGCAAG GCCGCCATGGTGCGCTTCCTGCAGCTCATCGCCTCCGAGCCCGACATCGCCCGCGTGCCCATCATGGTGGACTCCTCCAA GTGGGACGTGATCGAGGCCGGCCTGCGCTGCATCCAGGGCAAGGGCATCGTCAACTCCATCAGCATGAAAGAGGGCGTGG AGAAGTTCAAGCACGAGGCGCGCCTCGTCAAGCGCTACGGCGCCGCCGCCGTGGTCATGGCCTTCGACGAGGTGGGGCAG GCCGACACCTACGCGCGCAAGATCGAGATCTGCGAGCGCGCCTACCGCGTGCTGGTCGATGAAGTCGGCTTCCCGCCCGA GGACATCATCTTCGACCCCAACATCTTCGCGGTGGCCACGGGCATCGAGGAGCACAACAACTACGCGGTGGATTTCATCG AGGCCACGCGCTGGATCAAGCAGAACCTGCCGGGCGCCAAGGTGTCGGGCGGCGTCTCCAACGTGTCCTTCAGCTTCCGC GGCAACGACCCGGTGCGCGAGGCCATCCACACCGTGTTCCTCTACCACGCCATCAAGGCCGGCATGGACATGGGCATCGT CAACGCCGGCATGGTGGGCGTCTATGACGACCTGGAGCCCACCCTGCGCGAACGCGTGGAAGACGTGGTGCTCAACCGCC GGCCCGATGCGGGCGAACGCCTGGTGGAGATCGCCGAGACCGCCAAGAGCGGCGCCAAGGACGAGAGCCGGAAGCTCGAA TGGCGCAACGCCCCGGTGCGCGAGCGGCTCGCCCATGCGCTGGTGCACGGCATCACCGACTTCATCGTGGAGGACACGGA AGAGGCCTACCGGGAGATCCTGGCCGGGGGCGGCCGCCCGCTGCACGTGATCGAAGGCCCGCTCATGGACGGCATGAACA TCGTGGGCGACCTGTTCGGCGCCGGCAAGATGTTCCTGCCCCAGGTGGTGAAAAGCGCGCGCGTGATGAAGTCCGCCGTG GCCCACCTGATCCCCTACATCGAGGAAGAAAAGCGCCAGGACGAACTCGCCGGCCGCGACGTGCGCAGCAAGGGAAAGAT CGTCATCGCCACCGTGAAGGGCGACGTGCACGACATCGGCAAGAACATCGTCACCGTGGTCCTGCAGTGCAACAACTTCG AGGTGGTGAACATGGGCGTGATGGTCCCGTGCCACGAGATCCTCGCCAGGGCCAAGGTCGAGGGCGCGGACATCGTGGGC CTGTCGGGCCTCATCACGCCCAGCCTGGAAGAGATGCAGTACGTGGCCGGCGAGATGCAGAAGGACGACCACTTCCGCGT CCGGAAGATCCCGCTCCTGATCGGCGGCGCCACCTGCTCGCGCGTGCACACCGCCGTCAAGATCGCGCCGCACTACGAAG GCCCCGTGGTGTATGTGCCCGACGCCTCGCGCAGCGTGAGCGTGGCGCAGAGCCTGCTGGGCGACGGCGCGCAGAGCTAC GTCGATGAGCTGAACGCCGACTACGACAAGGTGCGCCAGCAGCACGCCAACAGGAAGCAGACGCCGATGTGGCCGCTGGC CAAGGCACGCGCCAACCGCACGCCCGTCAACTTCAGCACCTACCAGCCGCAGCCGCCCCGCCTGCTGGGCCGCCGCGTGT TCAAGAACTTCGACCTGGGCGAGCTGGCCAGATACATCGACTGGGGCCCCTTCTTCCAGACCTGGGACCTGGCCGGCCCG TACCCCGCCATCCTCGACGACGAGGTGGTGGGCGAGCAGGCCCGCCGCGTCTTCGCCGACGGCCAGGCCATGCTCAGGAA GATCATCGAAGGCCGCTGGCTCAGCGCGAGCGGCGTGCTGGCGCTCTACCCCGCCAACAGCGTGGGCGACGACATCGAGT TCTACACCGACGCATCGCGCACCGAAGTCGCCATGACCTGGTACGGCCTGCGCCAGCAGACCGAAAAGCAGGTGATCGAC GGCGTGATGCGCCCCAGCCGGTGCCTGGCCGACTTCGTCGCGCCCAAGGAGAGCGGCATCGCCGACTACGCCGGCCTTTT CGCCGTGACGGCCGGCCTGGGCGTGGAGAAGAAGGAACAGGCCTTCATCGACGCGCTGGACGACTACTCCGCCATCATGC TCAAGGGCCTGGCCGACCGCCTCGCCGAAGCCTTCGCCGAATGCCTGCACCAGCGCGTGCGCACCGACCTCTGGGGCTAT GCGGCCGGCGAGCAGCTGACCAACGAAGAGATGATCGCCGAGAAGTACCAGGGCATCCGCCCCGCGCCCGGCTACCCCGC CTGCCCGGACCACAGCGCCAAGACCGACCTCTTCCGCGTGCTGCAGTGCGAGGAGATCGGCATGGGCCTGACGGAAAGCC TGGCCATGACCCCCGCCGCCAGCGTGAGCGGCTTCTACATCGGCCACCCCGAGAGCACGTACTTCAACGTCGGCAAGATC GGGGAGGACCAGCTGCACGACATGGCCGAGCGGCGCGGGATGGACGAGAAGGTGCTGGAGCGGCTGCTGGCGCCGAATCT CTGA
Upstream 100 bases:
>100_bases CGACCGCCGCGGGCGCGCCGTCAGGCTCGGAGCCCGTGCCGAAGAATCGATGCCAACGACGCTCACCTGTCCTTTCCCAC CGTCCGCGCAGGTGAGCCCC
Downstream 100 bases:
>100_bases TTTGCGTCCTGCCCCGGAAAAGACGAAGGCCCCGCATGCGGGGCCTTCCATTTGGTGCATCTTTCAGCTTGTTAGCGTCC AGAGCGCATATCCCAGTGAT
Product: methionine synthase
Products: NA
Alternate protein names: 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12 dependent; MS [H]
Number of amino acids: Translated: 907; Mature: 906
Protein sequence:
>907_residues MSAPHSLPPMKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQVENGAQVIDINMDEAMLDSK AAMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQGKGIVNSISMKEGVEKFKHEARLVKRYGAAAVVMAFDEVGQ ADTYARKIEICERAYRVLVDEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFR GNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDDLEPTLRERVEDVVLNRRPDAGERLVEIAETAKSGAKDESRKLE WRNAPVRERLAHALVHGITDFIVEDTEEAYREILAGGGRPLHVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKSAV AHLIPYIEEEKRQDELAGRDVRSKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVG LSGLITPSLEEMQYVAGEMQKDDHFRVRKIPLLIGGATCSRVHTAVKIAPHYEGPVVYVPDASRSVSVAQSLLGDGAQSY VDELNADYDKVRQQHANRKQTPMWPLAKARANRTPVNFSTYQPQPPRLLGRRVFKNFDLGELARYIDWGPFFQTWDLAGP YPAILDDEVVGEQARRVFADGQAMLRKIIEGRWLSASGVLALYPANSVGDDIEFYTDASRTEVAMTWYGLRQQTEKQVID GVMRPSRCLADFVAPKESGIADYAGLFAVTAGLGVEKKEQAFIDALDDYSAIMLKGLADRLAEAFAECLHQRVRTDLWGY AAGEQLTNEEMIAEKYQGIRPAPGYPACPDHSAKTDLFRVLQCEEIGMGLTESLAMTPAASVSGFYIGHPESTYFNVGKI GEDQLHDMAERRGMDEKVLERLLAPNL
Sequences:
>Translated_907_residues MSAPHSLPPMKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQVENGAQVIDINMDEAMLDSK AAMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQGKGIVNSISMKEGVEKFKHEARLVKRYGAAAVVMAFDEVGQ ADTYARKIEICERAYRVLVDEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFR GNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDDLEPTLRERVEDVVLNRRPDAGERLVEIAETAKSGAKDESRKLE WRNAPVRERLAHALVHGITDFIVEDTEEAYREILAGGGRPLHVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKSAV AHLIPYIEEEKRQDELAGRDVRSKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVG LSGLITPSLEEMQYVAGEMQKDDHFRVRKIPLLIGGATCSRVHTAVKIAPHYEGPVVYVPDASRSVSVAQSLLGDGAQSY VDELNADYDKVRQQHANRKQTPMWPLAKARANRTPVNFSTYQPQPPRLLGRRVFKNFDLGELARYIDWGPFFQTWDLAGP YPAILDDEVVGEQARRVFADGQAMLRKIIEGRWLSASGVLALYPANSVGDDIEFYTDASRTEVAMTWYGLRQQTEKQVID GVMRPSRCLADFVAPKESGIADYAGLFAVTAGLGVEKKEQAFIDALDDYSAIMLKGLADRLAEAFAECLHQRVRTDLWGY AAGEQLTNEEMIAEKYQGIRPAPGYPACPDHSAKTDLFRVLQCEEIGMGLTESLAMTPAASVSGFYIGHPESTYFNVGKI GEDQLHDMAERRGMDEKVLERLLAPNL >Mature_906_residues SAPHSLPPMKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQVENGAQVIDINMDEAMLDSKA AMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQGKGIVNSISMKEGVEKFKHEARLVKRYGAAAVVMAFDEVGQA DTYARKIEICERAYRVLVDEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFRG NDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDDLEPTLRERVEDVVLNRRPDAGERLVEIAETAKSGAKDESRKLEW RNAPVRERLAHALVHGITDFIVEDTEEAYREILAGGGRPLHVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKSAVA HLIPYIEEEKRQDELAGRDVRSKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVGL SGLITPSLEEMQYVAGEMQKDDHFRVRKIPLLIGGATCSRVHTAVKIAPHYEGPVVYVPDASRSVSVAQSLLGDGAQSYV DELNADYDKVRQQHANRKQTPMWPLAKARANRTPVNFSTYQPQPPRLLGRRVFKNFDLGELARYIDWGPFFQTWDLAGPY PAILDDEVVGEQARRVFADGQAMLRKIIEGRWLSASGVLALYPANSVGDDIEFYTDASRTEVAMTWYGLRQQTEKQVIDG VMRPSRCLADFVAPKESGIADYAGLFAVTAGLGVEKKEQAFIDALDDYSAIMLKGLADRLAEAFAECLHQRVRTDLWGYA AGEQLTNEEMIAEKYQGIRPAPGYPACPDHSAKTDLFRVLQCEEIGMGLTESLAMTPAASVSGFYIGHPESTYFNVGKIG EDQLHDMAERRGMDEKVLERLLAPNL
Specific function: Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate [H]
COG id: COG1410
COG function: function code E; Methionine synthase I, cobalamin-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pterin-binding domain [H]
Homologues:
Organism=Homo sapiens, GI169790923, Length=914, Percent_Identity=54.4857768052516, Blast_Score=961, Evalue=0.0, Organism=Escherichia coli, GI1790450, Length=915, Percent_Identity=61.0928961748634, Blast_Score=1077, Evalue=0.0, Organism=Caenorhabditis elegans, GI17535405, Length=918, Percent_Identity=54.2483660130719, Blast_Score=949, Evalue=0.0,
Paralogues:
None
Copy number: 513 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1320 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR011005 - InterPro: IPR003759 - InterPro: IPR011822 - InterPro: IPR000489 - InterPro: IPR003726 - InterPro: IPR004223 [H]
Pfam domain/function: PF02310 B12-binding; PF02607 B12-binding_2; PF02965 Met_synt_B12; PF00809 Pterin_bind; PF02574 S-methyl_trans [H]
EC number: =2.1.1.13 [H]
Molecular weight: Translated: 99982; Mature: 99851
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS50974 ADOMET_ACTIVATION ; PS50972 PTERIN_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPHSLPPMKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQ CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH VENGAQVIDINMDEAMLDSKAAMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQG HHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCC KGIVNSISMKEGVEKFKHEARLVKRYGAAAVVMAFDEVGQADTYARKIEICERAYRVLVD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHH EVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFR HCCCCCHHEEECCCCEEEEECHHHCCCEEEHHHHHHHHHHHCCCCCEECCCCCEEEEEEC GNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDDLEPTLRERVEDVVLNRRPDAGER CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHH LVEIAETAKSGAKDESRKLEWRNAPVRERLAHALVHGITDFIVEDTEEAYREILAGGGRP HHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE LHVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKSAVAHLIPYIEEEKRQDELAGRD EEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VRSKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVG CCCCCCEEEEEECCCHHHHHHHHEEEEEECCCEEEEECCEECCHHHHHHHHHCCCCCEEC LSGLITPSLEEMQYVAGEMQKDDHFRVRKIPLLIGGATCSRVHTAVKIAPHYEGPVVYVP CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHHEEEECCCCCCEEECC DASRSVSVAQSLLGDGAQSYVDELNADYDKVRQQHANRKQTPMWPLAKARANRTPVNFST CCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCC YQPQPPRLLGRRVFKNFDLGELARYIDWGPFFQTWDLAGPYPAILDDEVVGEQARRVFAD CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GQAMLRKIIEGRWLSASGVLALYPANSVGDDIEFYTDASRTEVAMTWYGLRQQTEKQVID HHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHH GVMRPSRCLADFVAPKESGIADYAGLFAVTAGLGVEKKEQAFIDALDDYSAIMLKGLADR HHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LAEAFAECLHQRVRTDLWGYAAGEQLTNEEMIAEKYQGIRPAPGYPACPDHSAKTDLFRV HHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH LQCEEIGMGLTESLAMTPAASVSGFYIGHPESTYFNVGKIGEDQLHDMAERRGMDEKVLE HHHHHHCCCHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHCCCCHHHHH RLLAPNL HHHCCCC >Mature Secondary Structure SAPHSLPPMKLSGLEPVSIGEGTLFVNIGERTNVTGSKAFARMILNGQYEEALAVARQQ CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH VENGAQVIDINMDEAMLDSKAAMVRFLQLIASEPDIARVPIMVDSSKWDVIEAGLRCIQG HHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCC KGIVNSISMKEGVEKFKHEARLVKRYGAAAVVMAFDEVGQADTYARKIEICERAYRVLVD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHH EVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPGAKVSGGVSNVSFSFR HCCCCCHHEEECCCCEEEEECHHHCCCEEEHHHHHHHHHHHCCCCCEECCCCCEEEEEEC GNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDDLEPTLRERVEDVVLNRRPDAGER CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHH LVEIAETAKSGAKDESRKLEWRNAPVRERLAHALVHGITDFIVEDTEEAYREILAGGGRP HHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCE LHVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKSAVAHLIPYIEEEKRQDELAGRD EEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VRSKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCHEILARAKVEGADIVG CCCCCCEEEEEECCCHHHHHHHHEEEEEECCCEEEEECCEECCHHHHHHHHHCCCCCEEC LSGLITPSLEEMQYVAGEMQKDDHFRVRKIPLLIGGATCSRVHTAVKIAPHYEGPVVYVP CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHHEEEECCCCCCEEECC DASRSVSVAQSLLGDGAQSYVDELNADYDKVRQQHANRKQTPMWPLAKARANRTPVNFST CCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCC YQPQPPRLLGRRVFKNFDLGELARYIDWGPFFQTWDLAGPYPAILDDEVVGEQARRVFAD CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GQAMLRKIIEGRWLSASGVLALYPANSVGDDIEFYTDASRTEVAMTWYGLRQQTEKQVID HHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHH GVMRPSRCLADFVAPKESGIADYAGLFAVTAGLGVEKKEQAFIDALDDYSAIMLKGLADR HHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LAEAFAECLHQRVRTDLWGYAAGEQLTNEEMIAEKYQGIRPAPGYPACPDHSAKTDLFRV HHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH LQCEEIGMGLTESLAMTPAASVSGFYIGHPESTYFNVGKIGEDQLHDMAERRGMDEKVLE HHHHHHCCCHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHCCCCHHHHH RLLAPNL HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]