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The map label for this gene is ydhO [H]

Identifier: 120608733

GI number: 120608733

Start: 21112

End: 21666

Strand: Direct

Name: ydhO [H]

Synonym: Aave_0020

Alternate gene names: 120608733

Gene position: 21112-21666 (Clockwise)

Preceding gene: 120608732

Following gene: 120608734

Centisome position: 0.39

GC content: 73.33

Gene sequence:

>555_bases
ATGCAGTCCGAGTTCCCCCTTGCCCGCAGCGCCCGCGGTGACGGTGCCGCCGCGGGAACTTCCTCCCGCCGGGTCGTGCT
CGCCGCAGCATCGCTGGCGGCCGTGCTGCTGCTGCCGGCCTGCGGCACGTCGCCCTCCCGCGGCCGGCGCGGCGCGGCGC
CCGGTTACACGTATTCGCGCCTCACGCCCGAGCAATCGAGCGACATCGCGATCCACGCGATGGGCCTGGTCGGCACGCCG
TACCGCTACGGCGGCAACACGCCCGAGGGCGGGTTCGACTGCAGCGGCCTGATCGGCTACGTCTACCGCAGCCTCGCCGG
GATTCCGCCGCCGCGCACCGTGGCGCAACTGAGCGATTTCGGCGCCCCGGTGGAGGCGGGCGAGGAGCGCACCGGCGACC
TGGTGATCTTCGGCTCCGGCCGGCCGACGCATGCGGGGATCGTGGTGGAAGGCGGCCGCTTCGTGCATGCTCCCTCCACC
GGCGGCACGGTGAAGCTGGACCGTTTCAGCTCGGGCTACTGGTCCCGCCAGCCGATCGCGTTCCGCAGGCCGTGA

Upstream 100 bases:

>100_bases
CCGTGCCACGCCGTTGCCACGGCATGGCCGCTGTCCGGAAAGCCCCGCGCAAACCCGGGAAAACACCGCCGGTTTCGCAC
CTGCGGTAATCTGCCGCGCC

Downstream 100 bases:

>100_bases
GGCCTGCGCCGGACGGCGCGGACCGTCCGGTGCGATCTGGAACAAGGCGCGTTTTCGCGGGCGCGCGACAATTGCAGCCC
ATGAACCGCACCATTTCCCA

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MQSEFPLARSARGDGAAAGTSSRRVVLAAASLAAVLLLPACGTSPSRGRRGAAPGYTYSRLTPEQSSDIAIHAMGLVGTP
YRYGGNTPEGGFDCSGLIGYVYRSLAGIPPPRTVAQLSDFGAPVEAGEERTGDLVIFGSGRPTHAGIVVEGGRFVHAPST
GGTVKLDRFSSGYWSRQPIAFRRP

Sequences:

>Translated_184_residues
MQSEFPLARSARGDGAAAGTSSRRVVLAAASLAAVLLLPACGTSPSRGRRGAAPGYTYSRLTPEQSSDIAIHAMGLVGTP
YRYGGNTPEGGFDCSGLIGYVYRSLAGIPPPRTVAQLSDFGAPVEAGEERTGDLVIFGSGRPTHAGIVVEGGRFVHAPST
GGTVKLDRFSSGYWSRQPIAFRRP
>Mature_184_residues
MQSEFPLARSARGDGAAAGTSSRRVVLAAASLAAVLLLPACGTSPSRGRRGAAPGYTYSRLTPEQSSDIAIHAMGLVGTP
YRYGGNTPEGGFDCSGLIGYVYRSLAGIPPPRTVAQLSDFGAPVEAGEERTGDLVIFGSGRPTHAGIVVEGGRFVHAPST
GGTVKLDRFSSGYWSRQPIAFRRP

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=38.0952380952381, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786421, Length=123, Percent_Identity=31.7073170731707, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788501, Length=107, Percent_Identity=34.5794392523364, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788001, Length=109, Percent_Identity=35.7798165137615, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 19111; Mature: 19111

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSEFPLARSARGDGAAAGTSSRRVVLAAASLAAVLLLPACGTSPSRGRRGAAPGYTYSR
CCCCCCCHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LTPEQSSDIAIHAMGLVGTPYRYGGNTPEGGFDCSGLIGYVYRSLAGIPPPRTVAQLSDF
ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHC
GAPVEAGEERTGDLVIFGSGRPTHAGIVVEGGRFVHAPSTGGTVKLDRFSSGYWSRQPIA
CCCCCCCCCCCCCEEEECCCCCCCCEEEEECCEEEECCCCCCEEEEECCCCCCCCCCCEE
FRRP
CCCC
>Mature Secondary Structure
MQSEFPLARSARGDGAAAGTSSRRVVLAAASLAAVLLLPACGTSPSRGRRGAAPGYTYSR
CCCCCCCHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LTPEQSSDIAIHAMGLVGTPYRYGGNTPEGGFDCSGLIGYVYRSLAGIPPPRTVAQLSDF
ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHC
GAPVEAGEERTGDLVIFGSGRPTHAGIVVEGGRFVHAPSTGGTVKLDRFSSGYWSRQPIA
CCCCCCCCCCCCCEEEECCCCCCCCEEEEECCEEEECCCCCCEEEEECCCCCCCCCCCEE
FRRP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]