Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597422
Identifier: 120597422
GI number: 120597422
Start: 649755
End: 650429
Strand: Direct
Name: 120597422
Synonym: Sputw3181_0591
Alternate gene names: NA
Gene position: 649755-650429 (Clockwise)
Preceding gene: 120597421
Following gene: 120597426
Centisome position: 13.8
GC content: 41.19
Gene sequence:
>675_bases GTGTTTAATGATTTTAAAGTTCAACTCAGCACTTTTGACTGGAATGGCGTTTCAGGCCTAACCAACATCTTAATGGTTTT CCTTACAGCTTTATTGCTATATAGCCTCCGTCAAGGTTCTAAAAATATTAAAGAGTCAGCTCTTTCTCGTGATGCAGACA TTCTGCGTTGGGCTATGGCAGAAATGGATATATTAAAGCCCGCTATTCGTGTGCTTACGAACGCCCACAAGCGCGTGGCT TATTGTCAATGTAGTGAGGGCGGCCATACTACTAAAGAGTTCGCATGCAACTGGACTTCGGAAGAGCTCACCGCTGCGCA GGACGTGAGCGTGAAATTGCAGAGAATTGGCTATATGGCGCTACATAATTTGATTTCCCGTAATCATTTTATGAATGTTT GGGGACCTATGTATTTGTCTACTTGGTACTCACTGGAGCCTTGGGTTAAACATAAGCGACTCGAACTAGATGAACCTCTA ACTATTGAAGATGGGGCATATTCTCGGATGTATTTGGAGCAATTTGCACAGTATTGTGAAGCTAATATGCCCGAAGTGTT AGTGAACAATGAGCGTCGTCGTTTTAATTTGCCAGAAATGATAGTTAAGAAGCCAAGAATATCGAAAAATATTAAAAAGC ACTTCAGACGTTCCAATGAAAAACTCGATATCTAA
Upstream 100 bases:
>100_bases GAGTTCGAAAAATGTTAGCGATCTCGCGCTGGCTTTTTTTCAGTATAAATATTCAAGTTATTTACTATTTTTTGTCGTTA ACATTTTATAGGATATTGTT
Downstream 100 bases:
>100_bases ATTACTCTAATAAATTTCAGAACTATTCGTATACAGGGTGCTTGTCAATTACTCTCACTTGGTTAGCCGCGTTGTATGCT GATATCGGCGATATAGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MFNDFKVQLSTFDWNGVSGLTNILMVFLTALLLYSLRQGSKNIKESALSRDADILRWAMAEMDILKPAIRVLTNAHKRVA YCQCSEGGHTTKEFACNWTSEELTAAQDVSVKLQRIGYMALHNLISRNHFMNVWGPMYLSTWYSLEPWVKHKRLELDEPL TIEDGAYSRMYLEQFAQYCEANMPEVLVNNERRRFNLPEMIVKKPRISKNIKKHFRRSNEKLDI
Sequences:
>Translated_224_residues MFNDFKVQLSTFDWNGVSGLTNILMVFLTALLLYSLRQGSKNIKESALSRDADILRWAMAEMDILKPAIRVLTNAHKRVA YCQCSEGGHTTKEFACNWTSEELTAAQDVSVKLQRIGYMALHNLISRNHFMNVWGPMYLSTWYSLEPWVKHKRLELDEPL TIEDGAYSRMYLEQFAQYCEANMPEVLVNNERRRFNLPEMIVKKPRISKNIKKHFRRSNEKLDI >Mature_224_residues MFNDFKVQLSTFDWNGVSGLTNILMVFLTALLLYSLRQGSKNIKESALSRDADILRWAMAEMDILKPAIRVLTNAHKRVA YCQCSEGGHTTKEFACNWTSEELTAAQDVSVKLQRIGYMALHNLISRNHFMNVWGPMYLSTWYSLEPWVKHKRLELDEPL TIEDGAYSRMYLEQFAQYCEANMPEVLVNNERRRFNLPEMIVKKPRISKNIKKHFRRSNEKLDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26185; Mature: 26185
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS00368 RIBORED_SMALL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNDFKVQLSTFDWNGVSGLTNILMVFLTALLLYSLRQGSKNIKESALSRDADILRWAMA CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHH EMDILKPAIRVLTNAHKRVAYCQCSEGGHTTKEFACNWTSEELTAAQDVSVKLQRIGYMA HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LHNLISRNHFMNVWGPMYLSTWYSLEPWVKHKRLELDEPLTIEDGAYSRMYLEQFAQYCE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHC ANMPEVLVNNERRRFNLPEMIVKKPRISKNIKKHFRRSNEKLDI CCCCHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFNDFKVQLSTFDWNGVSGLTNILMVFLTALLLYSLRQGSKNIKESALSRDADILRWAMA CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHH EMDILKPAIRVLTNAHKRVAYCQCSEGGHTTKEFACNWTSEELTAAQDVSVKLQRIGYMA HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LHNLISRNHFMNVWGPMYLSTWYSLEPWVKHKRLELDEPLTIEDGAYSRMYLEQFAQYCE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHC ANMPEVLVNNERRRFNLPEMIVKKPRISKNIKKHFRRSNEKLDI CCCCHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA