Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597409
Identifier: 120597409
GI number: 120597409
Start: 635520
End: 635960
Strand: Direct
Name: 120597409
Synonym: Sputw3181_0578
Alternate gene names: NA
Gene position: 635520-635960 (Clockwise)
Preceding gene: 120597408
Following gene: 120597410
Centisome position: 13.5
GC content: 46.03
Gene sequence:
>441_bases ATGCATAACGTGATTCGTCAAAGTGTAAGCCGAACATTGATGGTGTTGGCCTTAGGCGTGATAGCCCTGCCAGTGATAGC TGGTGGAGGTTCTGAAATGTCTGAAGTGCCCTATAACGAAATCCAATTAAATCCTATTTCGATGATGGAAGCGGAGACCT TGGTTGGCAAGCAAGGTGTTTATTTTTTCGACGTAAATACGCTGGAGATATGGGCAGAAGGTTTTATCCCCGGAGCGGTT TTTTTCAATGTTCAGAATTGGAGAGAGTTACTTCCAAAGAATAAAGATGCGGTCATGGTGTTTTACTGCGCTAACCGCCT TTGCACCACCAGCAATATGGCGGCGAGAGAAACCATGAAGCTAGGTTACACCGGTGTGCGTCATATGGCCGATGGTATTT ATGGCTGGCGTATGTCTGGGCGAGTAACAGAAAAACCTTAG
Upstream 100 bases:
>100_bases TTATTGATGGTAAGGCGCTGAGTGCGAAGAAAATATAATTTAACTTGAGTCCTAGTTATCCCCGACACCTTAGGGTGTCG GGGAATATGAGAGCCTAATT
Downstream 100 bases:
>100_bases TAACACACAAGGCCGATGTTTTATCGGTTTGGTTTGCAGGGCCAAAAGGCGAAACCCACAGGGTTAACATTGTAGAGAAC ATAATATGAAAACACGTATA
Product: rhodanese domain-containing protein
Products: NA
Alternate protein names: Rhodanese Domain Protein; Cytochrome C Family Protein; Rhodanese-Like Protein
Number of amino acids: Translated: 146; Mature: 146
Protein sequence:
>146_residues MHNVIRQSVSRTLMVLALGVIALPVIAGGGSEMSEVPYNEIQLNPISMMEAETLVGKQGVYFFDVNTLEIWAEGFIPGAV FFNVQNWRELLPKNKDAVMVFYCANRLCTTSNMAARETMKLGYTGVRHMADGIYGWRMSGRVTEKP
Sequences:
>Translated_146_residues MHNVIRQSVSRTLMVLALGVIALPVIAGGGSEMSEVPYNEIQLNPISMMEAETLVGKQGVYFFDVNTLEIWAEGFIPGAV FFNVQNWRELLPKNKDAVMVFYCANRLCTTSNMAARETMKLGYTGVRHMADGIYGWRMSGRVTEKP >Mature_146_residues MHNVIRQSVSRTLMVLALGVIALPVIAGGGSEMSEVPYNEIQLNPISMMEAETLVGKQGVYFFDVNTLEIWAEGFIPGAV FFNVQNWRELLPKNKDAVMVFYCANRLCTTSNMAARETMKLGYTGVRHMADGIYGWRMSGRVTEKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16296; Mature: 16296
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.8 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.8 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNVIRQSVSRTLMVLALGVIALPVIAGGGSEMSEVPYNEIQLNPISMMEAETLVGKQGV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCE YFFDVNTLEIWAEGFIPGAVFFNVQNWRELLPKNKDAVMVFYCANRLCTTSNMAARETMK EEEECCHHEEEECCCCCCEEEEEHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHH LGYTGVRHMADGIYGWRMSGRVTEKP HCCHHHHHHHCCCCEEEECCEECCCC >Mature Secondary Structure MHNVIRQSVSRTLMVLALGVIALPVIAGGGSEMSEVPYNEIQLNPISMMEAETLVGKQGV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCE YFFDVNTLEIWAEGFIPGAVFFNVQNWRELLPKNKDAVMVFYCANRLCTTSNMAARETMK EEEECCHHEEEECCCCCCEEEEEHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHH LGYTGVRHMADGIYGWRMSGRVTEKP HCCHHHHHHHCCCCEEEECCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA