Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120597408

Identifier: 120597408

GI number: 120597408

Start: 633328

End: 635457

Strand: Direct

Name: 120597408

Synonym: Sputw3181_0577

Alternate gene names: NA

Gene position: 633328-635457 (Clockwise)

Preceding gene: 120597402

Following gene: 120597409

Centisome position: 13.45

GC content: 43.47

Gene sequence:

>2130_bases
ATGAAACGATGGAAATCCAAGGTGGCACTCAGTGTGCTATTTGGTTTAGGTTCTGCCATAAGTACCATCTCAATCGCTGC
CGATGCTAAATCGGATAATAAGGTGGTTCCTGGAGTGGGTAATAAACAGCAATCCCACTATACTCAAGATATTTTGGCTA
ATCCCAATTTAGCTGAAAATTTAATGGAACAATCTCGTGGTGTTAAAACACTACAGGATTATATTGTTCAAGAAAAAGAG
TTGTTTGATTTTTTATTTGAAAATCACCCCGTTTTTAAATATGACGCAGAAGGGCGATTAAAGGGCACTTATAAAGTCAG
TGATCGTGGTGAAGAATATTTACACGGTGGTGACAGTGTTGCTTACAGCAAACACAGTAAAGAAGTGAATTCAACGGATG
GCACTGCGGTGCGTTACAGTTCCTATAACGATGGTCAACGTCCCAAGGCCCTACAATACCGTTTAGGCGCAAAATCGATT
TTAGATTTTCCCAACAAGTTTGTTGGCCCTGAAAAATGTGGTGAGTGTCATGGTCCACAGTATGAGAAATGGAGACGTTC
ACGCCATTCAAAAACGATTCGTTTCCCTGGGGAGCATCCAGAGGTTGAAAACAATCTAGATAAAACCATGTATGGCACTA
AGGATACCTCTATCCTGCCAGACGGTATTACTCCAGATGTGATTTATGCCACTGTAGGTACGCCAAGAACAAAATATGGC
TTTATCGACGGTTACTTAGTACGCGGAACGTACCATGTGAAGGACGGTTTGCTTAAAGATGGCACTGGTACTATGGTCGC
TGGTGGTAACCAATTCTCCCGTGGTTGGGCTGAATGGTTAACACCTGAAATGGCAAAGAAAATCCAGAAAGTTATTCCTG
ACTTTCCAACTAAAATGGAAGATTTTGGCGGAAGTGGTTCACACCAATGGGGTATGAGCTCCTATGGCGCTAAATATGAG
AAGGAATTCTTATTCCAGCCAGCCAGTTCCTATTGTGAAATGTGCCACTCCTTTAAGTTTGACTTTAAAACGAAGGATGA
GTTTTTTGCAGCTTTAGGTAATCCTAAAGAATTACAAAAACATACTATTTCTAAAGGTATTACCTGTGAAGAGTGTCATG
GTGCAGGTGGTCATTTAGATGGTGGTATCGGTGGTGGTATGCCGTCTAACTGTGAGCGTTGTCACCAGCGTTTCAACTTT
GTTGAAGAGTTAGCCGAAACGCCGCAGGGTAAAGATAAACTGGAATATGCCTTTAACGTGAAGATGAAATCTTCTTGCCC
ATCCTGTGGTACAGAAGGTTCGCAAATGTTTGCCTCATCTCACTACGATAAAGGCATGCGTTGTTCTACCTGTCACGACC
CACACGAAGTGACGGATGGAGATTGGAAATCCGGTATTACCAAACCCAAAATCATCAAAGAATGTACCGATTGCCATACG
GCACAGGCCGAAATTGCGAGTAATACCAAGACTCACAGCAAACAAACCTGCCAAAGCTGCCATATGCCAAACATGGGTAG
TTGTGAAAACTTCACGGCGATCCAGTTCCCTGATGTCGCAGGCTTTGACAACGTCCGTAAATCACATATGTGGAAAATTG
ATGTTGATCCGCTACGTAAAACCCTTAATCCACCTGAAGGTAAGTCTCGCGACTCATCCACAAAAGGCTGGACTGTAGCG
AAGGACGAAAATGGCCATAACTACCTCGATCTCATGTGGACTTGTGCTCGCACATCCGCTTCTGATCACGATGTGGTGGA
TAACAAAGGTTGCCATAGCCAATTCCAATCTAAGTTAGGTGAGGGTCTGCACTTTAAAGATCAACAGGAAATCTACGGCA
GAGTTCAGAAGTGGCAAAAACCTGTGAAAGAAGCCTATGCCAAAGTAGAAAAAGCCCTTATTAGCATCGATAAGTCGCCC
AATATGGCCAAGTTATCGGTAGAAGATAAGACGCAAGTGCTGTTGTTAACCGATAAAGCTCAAGATGTCCTCAAGCTGAT
TAAAGCCGATGGTTCATGGGGTGTTCATGGTGCGCGTTACTCACAAAAACGCTTAGATGCCGCCTTGACCTATGTGACCC
AAGCCCAAGCCATTATTGATGGTAAGGCGCTGAGTGCGAAGAAAATATAA

Upstream 100 bases:

>100_bases
TTTGTCTCCATTATGCCATCACTGGTCAATTGTTTATGTCGTTCAGTGAGCAGTTAGGTTCAGTGGAAAATATAAAACTA
ATGATAATTAGGAGTGAATG

Downstream 100 bases:

>100_bases
TTTAACTTGAGTCCTAGTTATCCCCGACACCTTAGGGTGTCGGGGAATATGAGAGCCTAATTATGCATAACGTGATTCGT
CAAAGTGTAAGCCGAACATT

Product: cytochrome c

Products: NA

Alternate protein names: tRNA Synthetase Class II; Cytochrome C Family Protein

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE
LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI
LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG
FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE
KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF
VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT
AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA
KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP
NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI

Sequences:

>Translated_709_residues
MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE
LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI
LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG
FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE
KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF
VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT
AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA
KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP
NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI
>Mature_709_residues
MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE
LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI
LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG
FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE
KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF
VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT
AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA
KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP
NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79004; Mature: 79004

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS51008 MULTIHEME_CYTC L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAEN
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHH
LMEQSRGVKTLQDYIVQEKELFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSV
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCCE
AYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSILDFPNKFVGPEKCGECHGPQ
EECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHCCCHHHHCCCCCCC
YEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG
HHHHHHHHCCCEEECCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKME
CCCCEEEEEEEECCCCCEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
DFGGSGSHQWGMSSYGAKYEKEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQK
HCCCCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH
HTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNFVEELAETPQGKDKLEYAFNV
HHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
KMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT
EECCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHH
AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRK
HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEHHHHHH
TLNPPEGKSRDSSTKGWTVAKDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLG
HCCCCCCCCCCCCCCCEEEEECCCCCCEEHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHC
EGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSPNMAKLSVEDKTQVLLLTDKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCH
QDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAEN
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHH
LMEQSRGVKTLQDYIVQEKELFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSV
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCCE
AYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSILDFPNKFVGPEKCGECHGPQ
EECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHCCCHHHHCCCCCCC
YEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG
HHHHHHHHCCCEEECCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKME
CCCCEEEEEEEECCCCCEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
DFGGSGSHQWGMSSYGAKYEKEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQK
HCCCCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH
HTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNFVEELAETPQGKDKLEYAFNV
HHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
KMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT
EECCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHH
AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRK
HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEHHHHHH
TLNPPEGKSRDSSTKGWTVAKDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLG
HCCCCCCCCCCCCCCCEEEEECCCCCCEEHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHC
EGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSPNMAKLSVEDKTQVLLLTDKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCH
QDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA