Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597408
Identifier: 120597408
GI number: 120597408
Start: 633328
End: 635457
Strand: Direct
Name: 120597408
Synonym: Sputw3181_0577
Alternate gene names: NA
Gene position: 633328-635457 (Clockwise)
Preceding gene: 120597402
Following gene: 120597409
Centisome position: 13.45
GC content: 43.47
Gene sequence:
>2130_bases ATGAAACGATGGAAATCCAAGGTGGCACTCAGTGTGCTATTTGGTTTAGGTTCTGCCATAAGTACCATCTCAATCGCTGC CGATGCTAAATCGGATAATAAGGTGGTTCCTGGAGTGGGTAATAAACAGCAATCCCACTATACTCAAGATATTTTGGCTA ATCCCAATTTAGCTGAAAATTTAATGGAACAATCTCGTGGTGTTAAAACACTACAGGATTATATTGTTCAAGAAAAAGAG TTGTTTGATTTTTTATTTGAAAATCACCCCGTTTTTAAATATGACGCAGAAGGGCGATTAAAGGGCACTTATAAAGTCAG TGATCGTGGTGAAGAATATTTACACGGTGGTGACAGTGTTGCTTACAGCAAACACAGTAAAGAAGTGAATTCAACGGATG GCACTGCGGTGCGTTACAGTTCCTATAACGATGGTCAACGTCCCAAGGCCCTACAATACCGTTTAGGCGCAAAATCGATT TTAGATTTTCCCAACAAGTTTGTTGGCCCTGAAAAATGTGGTGAGTGTCATGGTCCACAGTATGAGAAATGGAGACGTTC ACGCCATTCAAAAACGATTCGTTTCCCTGGGGAGCATCCAGAGGTTGAAAACAATCTAGATAAAACCATGTATGGCACTA AGGATACCTCTATCCTGCCAGACGGTATTACTCCAGATGTGATTTATGCCACTGTAGGTACGCCAAGAACAAAATATGGC TTTATCGACGGTTACTTAGTACGCGGAACGTACCATGTGAAGGACGGTTTGCTTAAAGATGGCACTGGTACTATGGTCGC TGGTGGTAACCAATTCTCCCGTGGTTGGGCTGAATGGTTAACACCTGAAATGGCAAAGAAAATCCAGAAAGTTATTCCTG ACTTTCCAACTAAAATGGAAGATTTTGGCGGAAGTGGTTCACACCAATGGGGTATGAGCTCCTATGGCGCTAAATATGAG AAGGAATTCTTATTCCAGCCAGCCAGTTCCTATTGTGAAATGTGCCACTCCTTTAAGTTTGACTTTAAAACGAAGGATGA GTTTTTTGCAGCTTTAGGTAATCCTAAAGAATTACAAAAACATACTATTTCTAAAGGTATTACCTGTGAAGAGTGTCATG GTGCAGGTGGTCATTTAGATGGTGGTATCGGTGGTGGTATGCCGTCTAACTGTGAGCGTTGTCACCAGCGTTTCAACTTT GTTGAAGAGTTAGCCGAAACGCCGCAGGGTAAAGATAAACTGGAATATGCCTTTAACGTGAAGATGAAATCTTCTTGCCC ATCCTGTGGTACAGAAGGTTCGCAAATGTTTGCCTCATCTCACTACGATAAAGGCATGCGTTGTTCTACCTGTCACGACC CACACGAAGTGACGGATGGAGATTGGAAATCCGGTATTACCAAACCCAAAATCATCAAAGAATGTACCGATTGCCATACG GCACAGGCCGAAATTGCGAGTAATACCAAGACTCACAGCAAACAAACCTGCCAAAGCTGCCATATGCCAAACATGGGTAG TTGTGAAAACTTCACGGCGATCCAGTTCCCTGATGTCGCAGGCTTTGACAACGTCCGTAAATCACATATGTGGAAAATTG ATGTTGATCCGCTACGTAAAACCCTTAATCCACCTGAAGGTAAGTCTCGCGACTCATCCACAAAAGGCTGGACTGTAGCG AAGGACGAAAATGGCCATAACTACCTCGATCTCATGTGGACTTGTGCTCGCACATCCGCTTCTGATCACGATGTGGTGGA TAACAAAGGTTGCCATAGCCAATTCCAATCTAAGTTAGGTGAGGGTCTGCACTTTAAAGATCAACAGGAAATCTACGGCA GAGTTCAGAAGTGGCAAAAACCTGTGAAAGAAGCCTATGCCAAAGTAGAAAAAGCCCTTATTAGCATCGATAAGTCGCCC AATATGGCCAAGTTATCGGTAGAAGATAAGACGCAAGTGCTGTTGTTAACCGATAAAGCTCAAGATGTCCTCAAGCTGAT TAAAGCCGATGGTTCATGGGGTGTTCATGGTGCGCGTTACTCACAAAAACGCTTAGATGCCGCCTTGACCTATGTGACCC AAGCCCAAGCCATTATTGATGGTAAGGCGCTGAGTGCGAAGAAAATATAA
Upstream 100 bases:
>100_bases TTTGTCTCCATTATGCCATCACTGGTCAATTGTTTATGTCGTTCAGTGAGCAGTTAGGTTCAGTGGAAAATATAAAACTA ATGATAATTAGGAGTGAATG
Downstream 100 bases:
>100_bases TTTAACTTGAGTCCTAGTTATCCCCGACACCTTAGGGTGTCGGGGAATATGAGAGCCTAATTATGCATAACGTGATTCGT CAAAGTGTAAGCCGAACATT
Product: cytochrome c
Products: NA
Alternate protein names: tRNA Synthetase Class II; Cytochrome C Family Protein
Number of amino acids: Translated: 709; Mature: 709
Protein sequence:
>709_residues MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI
Sequences:
>Translated_709_residues MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI >Mature_709_residues MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAENLMEQSRGVKTLQDYIVQEKE LFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSVAYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSI LDFPNKFVGPEKCGECHGPQYEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKMEDFGGSGSHQWGMSSYGAKYE KEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQKHTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNF VEELAETPQGKDKLEYAFNVKMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRKTLNPPEGKSRDSSTKGWTVA KDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLGEGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSP NMAKLSVEDKTQVLLLTDKAQDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79004; Mature: 79004
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: PS51008 MULTIHEME_CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAEN CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHH LMEQSRGVKTLQDYIVQEKELFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSV HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCCE AYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSILDFPNKFVGPEKCGECHGPQ EECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHCCCHHHHCCCCCCC YEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG HHHHHHHHCCCEEECCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKME CCCCEEEEEEEECCCCCEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH DFGGSGSHQWGMSSYGAKYEKEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQK HCCCCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH HTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNFVEELAETPQGKDKLEYAFNV HHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE KMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT EECCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHH AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRK HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEHHHHHH TLNPPEGKSRDSSTKGWTVAKDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLG HCCCCCCCCCCCCCCCEEEEECCCCCCEEHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHC EGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSPNMAKLSVEDKTQVLLLTDKA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCH QDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKRWKSKVALSVLFGLGSAISTISIAADAKSDNKVVPGVGNKQQSHYTQDILANPNLAEN CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHH LMEQSRGVKTLQDYIVQEKELFDFLFENHPVFKYDAEGRLKGTYKVSDRGEEYLHGGDSV HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCCE AYSKHSKEVNSTDGTAVRYSSYNDGQRPKALQYRLGAKSILDFPNKFVGPEKCGECHGPQ EECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHCCCHHHHCCCCCCC YEKWRRSRHSKTIRFPGEHPEVENNLDKTMYGTKDTSILPDGITPDVIYATVGTPRTKYG HHHHHHHHCCCEEECCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC FIDGYLVRGTYHVKDGLLKDGTGTMVAGGNQFSRGWAEWLTPEMAKKIQKVIPDFPTKME CCCCEEEEEEEECCCCCEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH DFGGSGSHQWGMSSYGAKYEKEFLFQPASSYCEMCHSFKFDFKTKDEFFAALGNPKELQK HCCCCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH HTISKGITCEECHGAGGHLDGGIGGGMPSNCERCHQRFNFVEELAETPQGKDKLEYAFNV HHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE KMKSSCPSCGTEGSQMFASSHYDKGMRCSTCHDPHEVTDGDWKSGITKPKIIKECTDCHT EECCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHH AQAEIASNTKTHSKQTCQSCHMPNMGSCENFTAIQFPDVAGFDNVRKSHMWKIDVDPLRK HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEHHHHHH TLNPPEGKSRDSSTKGWTVAKDENGHNYLDLMWTCARTSASDHDVVDNKGCHSQFQSKLG HCCCCCCCCCCCCCCCEEEEECCCCCCEEHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHC EGLHFKDQQEIYGRVQKWQKPVKEAYAKVEKALISIDKSPNMAKLSVEDKTQVLLLTDKA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCH QDVLKLIKADGSWGVHGARYSQKRLDAALTYVTQAQAIIDGKALSAKKI HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA