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The map label for this gene is nudC [H]

Identifier: 119946829

GI number: 119946829

Start: 3978621

End: 3979442

Strand: Reverse

Name: nudC [H]

Synonym: Ping_3223

Alternate gene names: 119946829

Gene position: 3979442-3978621 (Counterclockwise)

Preceding gene: 119946831

Following gene: 119946828

Centisome position: 87.28

GC content: 39.9

Gene sequence:

>822_bases
ATGCAGCCGGAAAAAAATAACGTTAGCAAGCAAGAGAATGCTTGGTGGTTTATTATCGCGAGAGATCAAATTGTATTACA
GCCGCAAGGGAATTTCATTCCCTACGGTAATCTTGATGATTTGCCATTTCCCGAAGCATTAGCTAATAATGTGAAAAAAA
TAGGAGATTACGATTCAAGCCCTTGTTATTTAATCGTATTGCAGGAGAAATTAGATGTTGGTCTGGGGGAATATTTCCCA
TTACGCTCTTTGTTGGGACAGATCCATGATCTCTTATTTGATCTGGCGGGTCGTGCCTTTCAAGTCGCTTTATTTTATCA
AACACATCAGTATTGTGGTAAGTGCGGTAATAAAATGCATGCCATAAACTGGGAAACCGCAATGAAATGCTACCATTGCC
AGCACCGCTGTTATCCGCGTGTTTCTCCCTGTGTTATTGTTGGTATTCGTAAAGGCAAGGAAATATTATTAGCAGTGCAT
CATCGCCATTTGAAACAGAACAACCCGGTTTTTACGGTTTTAGCCGGATTTGTTGAAGCCGGAGAAACACTGGAGATGTG
TGTTGAACGTGAAGTCTATGAGGAATCAAGGATCCGGGTCAAAAATATCGAATATATCAGTAGTCAACCTTGGCCTTTCC
CGCACTCTTTAATGATGGGTTTTTTTGCTGAATATGAATCAGGTGAAATCAAGATTGATAAAAATGAGCTTGTTGAAGCA
GCTTGGTATCATATTGATAATCTGCCTGTGTTACCAAATAACGGCACCATTGCTCGAAAGTTGATTAACAAAATGGTTGA
ACAATGCAAAGTCGCAATATGA

Upstream 100 bases:

>100_bases
TTAGCGTCAACATGAATTTGAATTTGTAGATAATCTTACTGTATAACTGTGAAGTAATCCCAGTCCCTAGAATTAAATTT
CCGATAAATAAGGAAGCATA

Downstream 100 bases:

>100_bases
CAGAGTAAAAAACATTTAAAAATGGTAGCATATTTACCTATGTAAATGATTAAATGTTTAAAAAGACAGGATAGAGATAA
GCATGACAGAATTAAAAAAT

Product: nucleotide phosphate derivative pyrophosphohydrolases, MutT/nudix family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MQPEKNNVSKQENAWWFIIARDQIVLQPQGNFIPYGNLDDLPFPEALANNVKKIGDYDSSPCYLIVLQEKLDVGLGEYFP
LRSLLGQIHDLLFDLAGRAFQVALFYQTHQYCGKCGNKMHAINWETAMKCYHCQHRCYPRVSPCVIVGIRKGKEILLAVH
HRHLKQNNPVFTVLAGFVEAGETLEMCVEREVYEESRIRVKNIEYISSQPWPFPHSLMMGFFAEYESGEIKIDKNELVEA
AWYHIDNLPVLPNNGTIARKLINKMVEQCKVAI

Sequences:

>Translated_273_residues
MQPEKNNVSKQENAWWFIIARDQIVLQPQGNFIPYGNLDDLPFPEALANNVKKIGDYDSSPCYLIVLQEKLDVGLGEYFP
LRSLLGQIHDLLFDLAGRAFQVALFYQTHQYCGKCGNKMHAINWETAMKCYHCQHRCYPRVSPCVIVGIRKGKEILLAVH
HRHLKQNNPVFTVLAGFVEAGETLEMCVEREVYEESRIRVKNIEYISSQPWPFPHSLMMGFFAEYESGEIKIDKNELVEA
AWYHIDNLPVLPNNGTIARKLINKMVEQCKVAI
>Mature_273_residues
MQPEKNNVSKQENAWWFIIARDQIVLQPQGNFIPYGNLDDLPFPEALANNVKKIGDYDSSPCYLIVLQEKLDVGLGEYFP
LRSLLGQIHDLLFDLAGRAFQVALFYQTHQYCGKCGNKMHAINWETAMKCYHCQHRCYPRVSPCVIVGIRKGKEILLAVH
HRHLKQNNPVFTVLAGFVEAGETLEMCVEREVYEESRIRVKNIEYISSQPWPFPHSLMMGFFAEYESGEIKIDKNELVEA
AWYHIDNLPVLPNNGTIARKLINKMVEQCKVAI

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=174, Percent_Identity=35.632183908046, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI50593112, Length=215, Percent_Identity=28.3720930232558, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI48994995, Length=267, Percent_Identity=46.0674157303371, Blast_Score=240, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI71986510, Length=139, Percent_Identity=34.5323741007194, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212645999, Length=139, Percent_Identity=34.5323741007194, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321371, Length=199, Percent_Identity=28.643216080402, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 31414; Mature: 31414

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPEKNNVSKQENAWWFIIARDQIVLQPQGNFIPYGNLDDLPFPEALANNVKKIGDYDSS
CCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
PCYLIVLQEKLDVGLGEYFPLRSLLGQIHDLLFDLAGRAFQVALFYQTHQYCGKCGNKMH
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEE
AINWETAMKCYHCQHRCYPRVSPCVIVGIRKGKEILLAVHHRHLKQNNPVFTVLAGFVEA
EECHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHHCCCCCEEEEHHHHHHC
GETLEMCVEREVYEESRIRVKNIEYISSQPWPFPHSLMMGFFAEYESGEIKIDKNELVEA
CHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHH
AWYHIDNLPVLPNNGTIARKLINKMVEQCKVAI
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQPEKNNVSKQENAWWFIIARDQIVLQPQGNFIPYGNLDDLPFPEALANNVKKIGDYDSS
CCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
PCYLIVLQEKLDVGLGEYFPLRSLLGQIHDLLFDLAGRAFQVALFYQTHQYCGKCGNKMH
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEE
AINWETAMKCYHCQHRCYPRVSPCVIVGIRKGKEILLAVHHRHLKQNNPVFTVLAGFVEA
EECHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHHCCCCCEEEEHHHHHHC
GETLEMCVEREVYEESRIRVKNIEYISSQPWPFPHSLMMGFFAEYESGEIKIDKNELVEA
CHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHH
AWYHIDNLPVLPNNGTIARKLINKMVEQCKVAI
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA