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The map label for this gene is yebA [H]

Identifier: 119946831

GI number: 119946831

Start: 3980220

End: 3981551

Strand: Reverse

Name: yebA [H]

Synonym: Ping_3225

Alternate gene names: 119946831

Gene position: 3981551-3980220 (Counterclockwise)

Preceding gene: 119946832

Following gene: 119946829

Centisome position: 87.32

GC content: 39.64

Gene sequence:

>1332_bases
ATGCTATTTTTGTTACCTTTAAAGGCGTTTTTTAAAGCGTCTATCGCCGTTGTGAATAATCTTCCCCGGAAACATTTTTT
CGCTTTGATTTTATTATTTGTATTTCTTTTGGTTATTTCCCTGGTTCCCATGCAGCCGAAAACCAAAAAAACAATTTACC
GCTCATTAGAACTACCTGAGGGAGTTGTTGTTAAAGATGAGCATGCGGCTGCCGAACCGCTTGCTGCAATAAAAGATGAA
TATGCAAAAGTATTTCCTGATTTTTCGGGAAACAAAGAAGTTGAATTTGAGGTTAACGATGGTGACTCTCTCAGCAATAT
TTTTGAAAAAGAGAGCTTGTCGGCAGGTGCATTACAGCTTTTGTTAGATGCCGATAAAGAACATCTGCGCTTAGCCAACC
TAATCCCAGGGCAAAGGATTAAGTTATTGATTGGTCCTGACAACAATCTGCTCTCCTTAAAAGTATTTTTGGATCTTGCC
AATACGTTAACCTTTACTCTGAAAGAGGATCAATATGATGCACTTTTGGAAACTAAAGCGGGGAAATGGCGCGAAAGTTT
ATACCAAGGTCGTATCATAGGAAGCTTCTATAAGACAGCCAAAGCTTCAGGTCTTACGGCGGCGCAGATTCAACAAGTAT
CAGCGACTCTGCAGGATAAAATTAACTTTAACCGTCTTTATGCTGGAGATACTTTCCGTGTGTTAGTGTCAAAACAATAT
ATTGATGGACAATATAGTTCAGAAAGTGACGTATTGGCTATTTTGATTAAAAACAGGAATAAAACTTATACCGCTTTTCT
GCATGAAGACGGGCGTTATTATGATAAAAATAGGCAAGGCTTAAGTAAAGCTTATCGACGCTTTCCTGTGAATGGAAAGT
TCCGCATCAGTTCTAACTTTAATCGAAAACGTTTACATCCAATCACCAAAAGAGTAAGTCCCCATAACGGTACTGATTTT
GCTGTATCAACGGGCACAAAAGTTTATAGCATTGGTGATGGTGTTGTTTTGCGGGCAGGTTATCATCCCGCAGCTGGCAA
TTATATTGTTATGCAGCATAGCCGGAAATACACCACACGTTATTTGCATTTAAGTAAAATTTTGGTTCGTAAAGGGCAGA
GAGTAGAAAGGGGCGCTGTGATAGCTAGAAGTGGTAATACCGGGCGTTCAACCGGGGCGCATCTGCATTATGAATTTCAA
ATAAATAATCGCCCGGTAGATGCAATGAAAGTGTCGTTACCTCTTTCAACAGCAGTCTCTAAAAAAGAGGAGCGTGCTTT
TGATAAAAGACGCGATCTTTACCTGCAGGAGATGGGCATTAATAATATCTAA

Upstream 100 bases:

>100_bases
TAAAATGAGATCTATTTTTTTTATAAAAAAATAAAAAACTTGGTATACTTCTCCGTTTTATTTTCATTACTCCCTTTCCC
TGCTTGAGTTGTACTAAGTT

Downstream 100 bases:

>100_bases
GATAGATATGATAGGAGTAATAATAGCGCTGAGTATTAAGTTAATAGCGCTATTATTATTGATGCCGGTGTATTTGACTC
AGGCAGTGTCATTTCGCTGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MLFLLPLKAFFKASIAVVNNLPRKHFFALILLFVFLLVISLVPMQPKTKKTIYRSLELPEGVVVKDEHAAAEPLAAIKDE
YAKVFPDFSGNKEVEFEVNDGDSLSNIFEKESLSAGALQLLLDADKEHLRLANLIPGQRIKLLIGPDNNLLSLKVFLDLA
NTLTFTLKEDQYDALLETKAGKWRESLYQGRIIGSFYKTAKASGLTAAQIQQVSATLQDKINFNRLYAGDTFRVLVSKQY
IDGQYSSESDVLAILIKNRNKTYTAFLHEDGRYYDKNRQGLSKAYRRFPVNGKFRISSNFNRKRLHPITKRVSPHNGTDF
AVSTGTKVYSIGDGVVLRAGYHPAAGNYIVMQHSRKYTTRYLHLSKILVRKGQRVERGAVIARSGNTGRSTGAHLHYEFQ
INNRPVDAMKVSLPLSTAVSKKEERAFDKRRDLYLQEMGINNI

Sequences:

>Translated_443_residues
MLFLLPLKAFFKASIAVVNNLPRKHFFALILLFVFLLVISLVPMQPKTKKTIYRSLELPEGVVVKDEHAAAEPLAAIKDE
YAKVFPDFSGNKEVEFEVNDGDSLSNIFEKESLSAGALQLLLDADKEHLRLANLIPGQRIKLLIGPDNNLLSLKVFLDLA
NTLTFTLKEDQYDALLETKAGKWRESLYQGRIIGSFYKTAKASGLTAAQIQQVSATLQDKINFNRLYAGDTFRVLVSKQY
IDGQYSSESDVLAILIKNRNKTYTAFLHEDGRYYDKNRQGLSKAYRRFPVNGKFRISSNFNRKRLHPITKRVSPHNGTDF
AVSTGTKVYSIGDGVVLRAGYHPAAGNYIVMQHSRKYTTRYLHLSKILVRKGQRVERGAVIARSGNTGRSTGAHLHYEFQ
INNRPVDAMKVSLPLSTAVSKKEERAFDKRRDLYLQEMGINNI
>Mature_443_residues
MLFLLPLKAFFKASIAVVNNLPRKHFFALILLFVFLLVISLVPMQPKTKKTIYRSLELPEGVVVKDEHAAAEPLAAIKDE
YAKVFPDFSGNKEVEFEVNDGDSLSNIFEKESLSAGALQLLLDADKEHLRLANLIPGQRIKLLIGPDNNLLSLKVFLDLA
NTLTFTLKEDQYDALLETKAGKWRESLYQGRIIGSFYKTAKASGLTAAQIQQVSATLQDKINFNRLYAGDTFRVLVSKQY
IDGQYSSESDVLAILIKNRNKTYTAFLHEDGRYYDKNRQGLSKAYRRFPVNGKFRISSNFNRKRLHPITKRVSPHNGTDF
AVSTGTKVYSIGDGVVLRAGYHPAAGNYIVMQHSRKYTTRYLHLSKILVRKGQRVERGAVIARSGNTGRSTGAHLHYEFQ
INNRPVDAMKVSLPLSTAVSKKEERAFDKRRDLYLQEMGINNI

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=426, Percent_Identity=37.793427230047, Blast_Score=277, Evalue=9e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50023; Mature: 50023

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFLLPLKAFFKASIAVVNNLPRKHFFALILLFVFLLVISLVPMQPKTKKTIYRSLELPE
CEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
GVVVKDEHAAAEPLAAIKDEYAKVFPDFSGNKEVEFEVNDGDSLSNIFEKESLSAGALQL
CEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHE
LLDADKEHLRLANLIPGQRIKLLIGPDNNLLSLKVFLDLANTLTFTLKEDQYDALLETKA
EECCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEHHCCEEEEEECCCHHHHHHHCC
GKWRESLYQGRIIGSFYKTAKASGLTAAQIQQVSATLQDKINFNRLYAGDTFRVLVSKQY
CHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHH
IDGQYSSESDVLAILIKNRNKTYTAFLHEDGRYYDKNRQGLSKAYRRFPVNGKFRISSNF
CCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEECCCHHHHHHHHHHCCCCCEEEECCCC
NRKRLHPITKRVSPHNGTDFAVSTGTKVYSIGDGVVLRAGYHPAAGNYIVMQHSRKYTTR
CCHHCCHHHHHCCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCCEEEEECCCCHHHH
YLHLSKILVRKGQRVERGAVIARSGNTGRSTGAHLHYEFQINNRPVDAMKVSLPLSTAVS
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHH
KKEERAFDKRRDLYLQEMGINNI
HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLFLLPLKAFFKASIAVVNNLPRKHFFALILLFVFLLVISLVPMQPKTKKTIYRSLELPE
CEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
GVVVKDEHAAAEPLAAIKDEYAKVFPDFSGNKEVEFEVNDGDSLSNIFEKESLSAGALQL
CEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHE
LLDADKEHLRLANLIPGQRIKLLIGPDNNLLSLKVFLDLANTLTFTLKEDQYDALLETKA
EECCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEHHCCEEEEEECCCHHHHHHHCC
GKWRESLYQGRIIGSFYKTAKASGLTAAQIQQVSATLQDKINFNRLYAGDTFRVLVSKQY
CHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHH
IDGQYSSESDVLAILIKNRNKTYTAFLHEDGRYYDKNRQGLSKAYRRFPVNGKFRISSNF
CCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEECCCHHHHHHHHHHCCCCCEEEECCCC
NRKRLHPITKRVSPHNGTDFAVSTGTKVYSIGDGVVLRAGYHPAAGNYIVMQHSRKYTTR
CCHHCCHHHHHCCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCCEEEEECCCCHHHH
YLHLSKILVRKGQRVERGAVIARSGNTGRSTGAHLHYEFQINNRPVDAMKVSLPLSTAVS
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHH
KKEERAFDKRRDLYLQEMGINNI
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]