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The map label for this gene is agpA [H]

Identifier: 119946767

GI number: 119946767

Start: 3890498

End: 3892537

Strand: Reverse

Name: agpA [H]

Synonym: Ping_3160

Alternate gene names: 119946767

Gene position: 3892537-3890498 (Counterclockwise)

Preceding gene: 119946768

Following gene: 119946766

Centisome position: 85.37

GC content: 45.25

Gene sequence:

>2040_bases
ATGTCTAAATTTCTGATTGCTGGTGCGCTAGCACTGATATCAGGTAATGCAGCGGCCGCGTGCCCGTCTATCGCTGGTGC
TGATGCGGGTGGTACTTATCCGCATCTATTTGAAAAAACTGAATTTGAAAGTCTGCATGGCTGCCAAATGAAGTTTAATG
CAAACCCGGATATAACCGCACTTAATAGCCGTATTGCGGGTAATCCAGCACTACCTTCATTAGTACAACGTTTACCACAA
GAGCCCTTGGTGATTGCTCCCTATCAGACTATTGGTCAGTATGGCGGTGTGTTAAAAGGAATTTCAAAAGCGACTGAAGC
AGGCACTTCTGATCTGTTGTCGGTACGTCATGTGAATCTGGTCCGTTTTAGTGATGACTTATCCACAGTCGTGCCCAACG
TAGCTAAATCTTGGGAATGGAACAGCGATTTTACTGTCCTTAAGGTTAATCTTCGTAAAGGCCATAAGTGGTCAGACGGT
AGTCCCTTCACTGCTGAAGATATTGCTTTCTGGTACAACAATATGCTGATGGACAGCAATATTATTGAAAAACCAAAAGA
GCGCTTTTTGTCTGGCGGTAAAGCGGTCAAAGTTGATGTGCTGAATAAAACCACAGTGCAGTTCACCATGAACGCACCTT
CACCGGGCTTTCTGGATAACTTTGCTCAAGATTATGCCCAGCCGTTTCAACCTAAGCACCTGCTGGCTCAGTTTCACCCT
GATTTTAATAAAGACGCCGATAAAAAAGCCCAAGAATTGGGTTTTGAGAATGGCTATGAGCTGATTAATTTTTACTATGG
CCAGTCTGACTGGAAAGATATTCCCACTCCTTTACTAAAAGATAAAGCGGCTTCGGATCGATTGGTTAATGCGGGTTTAA
CAGCCATTATGCCGACGCTTGAATCTCATGTAGTGATCGATGAGTCTCTTGAAGGTCGCCGTCTGGTCGCTAATCCATAC
TTCTTTCAGGTAGATACTGCGGGTAATCAACTGCCTTATATTAACGAAATCAAAGAAGTTTTTATTGGTGATGAAGATAT
TCAAACCGCTAAGTTAATTGCCGGTGAAGTGGACTATAAAGCGCAGGCGGTTAACCTGCCTCAGACGCCTGTCCTACTGG
AAAATAAAGAGCTGGGACAATATGAGATAGCGTTGCGTCCAACCATAGCGCAAACAACTTTTGCCTTCAATCTGACTGAC
AAAGACGAAGAGAAGCGTGCGGTATTTAACGATATCAACTTCCGCCGCGCTATGTCAGTCGCCATGAACCGTAAACAGAT
CAACGAGAGTGCTTACTTCGGATTGGGTACACCCATGCAGTACACGGGTTTTGATGCTGATACTACGCCCTTTATAACGA
AGAAACTGCAGCAGAGCTGGACTCAGTTTGATCCAAAAATGGCCGCTAAATTGCTTGATAAAGCAGGTGTTGTAGATCAA
GACAATGACGGTTTACGGGATTTACCTTCGGGCAAAAAGTTTGAGTTAGACATTCAATACTCTACTCAGGGAACCCCGAC
TGAACTGGCTGAAATCGTCGCTAATAATTGGACCAATGCGGGTATAAAAACCACCATTAAAGAAGTGACTTCAGATGAGT
ACCGTAACTCGCAGACGGCTAACGACCTGAGCGTGCTTAGCTGGGTGATGGGTCGTCCGCTGTCAAATATTGCAAGTAAT
ACCGAAACACTGGTTCCGCCCTATGGTGGTTTCTTCGATCTGCGCACCGGTATGCTGTGGTCACAGTATATTAACACTGA
GGGTGCTGAAGGTATCGCGCCGCCGGCAACCGTTGCAAAAATGCAGAAATTGGCTGCTCGCTTCGTGACACTGAAAGCCG
GTACACCGGAGTCTAATAAACTGGGTCTAGAGATTGCCACACGTGTGGTTGATGATCTGTTCATTATCGGGACAGTAAAA
GCGGTCTCTCCGGTTTATTACAGCCGCGCTCTGGGTAACTTTGAAGTTCCTAAGACCTCTTCATACGAGTTCTATCGTAT
GTATCCCTACCTTCCTACTCAGTGGTTTTTGAGTAAATAA

Upstream 100 bases:

>100_bases
TTTAATCCGTTAATTGCACAAACCAGCATCTCTGCACCTCAACCTAATAAATTATTTAACGAACAATCTGTTCGACATTT
TACCCCTAAGGAAATAACTC

Downstream 100 bases:

>100_bases
TGTAGATTATCACTCCTTAGTTTGAAACACCGAAAAGAGAGAACTAACACTTCTCTCTTTTAGTTATTTTTGTTTACCGA
GTCCAATTATGATTGCCGAT

Product: oligopeptide ABC transporter extracellular solute-binding family 5 protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 678

Protein sequence:

>679_residues
MSKFLIAGALALISGNAAAACPSIAGADAGGTYPHLFEKTEFESLHGCQMKFNANPDITALNSRIAGNPALPSLVQRLPQ
EPLVIAPYQTIGQYGGVLKGISKATEAGTSDLLSVRHVNLVRFSDDLSTVVPNVAKSWEWNSDFTVLKVNLRKGHKWSDG
SPFTAEDIAFWYNNMLMDSNIIEKPKERFLSGGKAVKVDVLNKTTVQFTMNAPSPGFLDNFAQDYAQPFQPKHLLAQFHP
DFNKDADKKAQELGFENGYELINFYYGQSDWKDIPTPLLKDKAASDRLVNAGLTAIMPTLESHVVIDESLEGRRLVANPY
FFQVDTAGNQLPYINEIKEVFIGDEDIQTAKLIAGEVDYKAQAVNLPQTPVLLENKELGQYEIALRPTIAQTTFAFNLTD
KDEEKRAVFNDINFRRAMSVAMNRKQINESAYFGLGTPMQYTGFDADTTPFITKKLQQSWTQFDPKMAAKLLDKAGVVDQ
DNDGLRDLPSGKKFELDIQYSTQGTPTELAEIVANNWTNAGIKTTIKEVTSDEYRNSQTANDLSVLSWVMGRPLSNIASN
TETLVPPYGGFFDLRTGMLWSQYINTEGAEGIAPPATVAKMQKLAARFVTLKAGTPESNKLGLEIATRVVDDLFIIGTVK
AVSPVYYSRALGNFEVPKTSSYEFYRMYPYLPTQWFLSK

Sequences:

>Translated_679_residues
MSKFLIAGALALISGNAAAACPSIAGADAGGTYPHLFEKTEFESLHGCQMKFNANPDITALNSRIAGNPALPSLVQRLPQ
EPLVIAPYQTIGQYGGVLKGISKATEAGTSDLLSVRHVNLVRFSDDLSTVVPNVAKSWEWNSDFTVLKVNLRKGHKWSDG
SPFTAEDIAFWYNNMLMDSNIIEKPKERFLSGGKAVKVDVLNKTTVQFTMNAPSPGFLDNFAQDYAQPFQPKHLLAQFHP
DFNKDADKKAQELGFENGYELINFYYGQSDWKDIPTPLLKDKAASDRLVNAGLTAIMPTLESHVVIDESLEGRRLVANPY
FFQVDTAGNQLPYINEIKEVFIGDEDIQTAKLIAGEVDYKAQAVNLPQTPVLLENKELGQYEIALRPTIAQTTFAFNLTD
KDEEKRAVFNDINFRRAMSVAMNRKQINESAYFGLGTPMQYTGFDADTTPFITKKLQQSWTQFDPKMAAKLLDKAGVVDQ
DNDGLRDLPSGKKFELDIQYSTQGTPTELAEIVANNWTNAGIKTTIKEVTSDEYRNSQTANDLSVLSWVMGRPLSNIASN
TETLVPPYGGFFDLRTGMLWSQYINTEGAEGIAPPATVAKMQKLAARFVTLKAGTPESNKLGLEIATRVVDDLFIIGTVK
AVSPVYYSRALGNFEVPKTSSYEFYRMYPYLPTQWFLSK
>Mature_678_residues
SKFLIAGALALISGNAAAACPSIAGADAGGTYPHLFEKTEFESLHGCQMKFNANPDITALNSRIAGNPALPSLVQRLPQE
PLVIAPYQTIGQYGGVLKGISKATEAGTSDLLSVRHVNLVRFSDDLSTVVPNVAKSWEWNSDFTVLKVNLRKGHKWSDGS
PFTAEDIAFWYNNMLMDSNIIEKPKERFLSGGKAVKVDVLNKTTVQFTMNAPSPGFLDNFAQDYAQPFQPKHLLAQFHPD
FNKDADKKAQELGFENGYELINFYYGQSDWKDIPTPLLKDKAASDRLVNAGLTAIMPTLESHVVIDESLEGRRLVANPYF
FQVDTAGNQLPYINEIKEVFIGDEDIQTAKLIAGEVDYKAQAVNLPQTPVLLENKELGQYEIALRPTIAQTTFAFNLTDK
DEEKRAVFNDINFRRAMSVAMNRKQINESAYFGLGTPMQYTGFDADTTPFITKKLQQSWTQFDPKMAAKLLDKAGVVDQD
NDGLRDLPSGKKFELDIQYSTQGTPTELAEIVANNWTNAGIKTTIKEVTSDEYRNSQTANDLSVLSWVMGRPLSNIASNT
ETLVPPYGGFFDLRTGMLWSQYINTEGAEGIAPPATVAKMQKLAARFVTLKAGTPESNKLGLEIATRVVDDLFIIGTVKA
VSPVYYSRALGNFEVPKTSSYEFYRMYPYLPTQWFLSK

Specific function: Probably involved in an alpha-galactosides intake transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 75258; Mature: 75127

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFLIAGALALISGNAAAACPSIAGADAGGTYPHLFEKTEFESLHGCQMKFNANPDITA
CCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHCCCCHHCCCCCEEEECCCCCEEE
LNSRIAGNPALPSLVQRLPQEPLVIAPYQTIGQYGGVLKGISKATEAGTSDLLSVRHVNL
ECCCCCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEE
VRFSDDLSTVVPNVAKSWEWNSDFTVLKVNLRKGHKWSDGSPFTAEDIAFWYNNMLMDSN
EEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCH
IIEKPKERFLSGGKAVKVDVLNKTTVQFTMNAPSPGFLDNFAQDYAQPFQPKHLLAQFHP
HHHHHHHHHHCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHCC
DFNKDADKKAQELGFENGYELINFYYGQSDWKDIPTPLLKDKAASDRLVNAGLTAIMPTL
CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCHHHHHHHH
ESHVVIDESLEGRRLVANPYFFQVDTAGNQLPYINEIKEVFIGDEDIQTAKLIAGEVDYK
HCCEEEECCCCCCEEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCC
AQAVNLPQTPVLLENKELGQYEIALRPTIAQTTFAFNLTDKDEEKRAVFNDINFRRAMSV
EEEECCCCCCEEEECCCCCCEEEEECCEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHH
AMNRKQINESAYFGLGTPMQYTGFDADTTPFITKKLQQSWTQFDPKMAAKLLDKAGVVDQ
HHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
DNDGLRDLPSGKKFELDIQYSTQGTPTELAEIVANNWTNAGIKTTIKEVTSDEYRNSQTA
CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
NDLSVLSWVMGRPLSNIASNTETLVPPYGGFFDLRTGMLWSQYINTEGAEGIAPPATVAK
HHHHHHHHHHCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
MQKLAARFVTLKAGTPESNKLGLEIATRVVDDLFIIGTVKAVSPVYYSRALGNFEVPKTS
HHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCCCCC
SYEFYRMYPYLPTQWFLSK
CCCEEEECCCCCCHHHCCC
>Mature Secondary Structure 
SKFLIAGALALISGNAAAACPSIAGADAGGTYPHLFEKTEFESLHGCQMKFNANPDITA
CCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHCCCCHHCCCCCEEEECCCCCEEE
LNSRIAGNPALPSLVQRLPQEPLVIAPYQTIGQYGGVLKGISKATEAGTSDLLSVRHVNL
ECCCCCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEE
VRFSDDLSTVVPNVAKSWEWNSDFTVLKVNLRKGHKWSDGSPFTAEDIAFWYNNMLMDSN
EEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCH
IIEKPKERFLSGGKAVKVDVLNKTTVQFTMNAPSPGFLDNFAQDYAQPFQPKHLLAQFHP
HHHHHHHHHHCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHCC
DFNKDADKKAQELGFENGYELINFYYGQSDWKDIPTPLLKDKAASDRLVNAGLTAIMPTL
CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCHHHHHHHH
ESHVVIDESLEGRRLVANPYFFQVDTAGNQLPYINEIKEVFIGDEDIQTAKLIAGEVDYK
HCCEEEECCCCCCEEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCC
AQAVNLPQTPVLLENKELGQYEIALRPTIAQTTFAFNLTDKDEEKRAVFNDINFRRAMSV
EEEECCCCCCEEEECCCCCCEEEEECCEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHH
AMNRKQINESAYFGLGTPMQYTGFDADTTPFITKKLQQSWTQFDPKMAAKLLDKAGVVDQ
HHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
DNDGLRDLPSGKKFELDIQYSTQGTPTELAEIVANNWTNAGIKTTIKEVTSDEYRNSQTA
CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
NDLSVLSWVMGRPLSNIASNTETLVPPYGGFFDLRTGMLWSQYINTEGAEGIAPPATVAK
HHHHHHHHHHCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
MQKLAARFVTLKAGTPESNKLGLEIATRVVDDLFIIGTVKAVSPVYYSRALGNFEVPKTS
HHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCCCCC
SYEFYRMYPYLPTQWFLSK
CCCEEEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9791127; 11481431 [H]