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The map label for this gene is yliC [C]

Identifier: 119946766

GI number: 119946766

Start: 3889228

End: 3890409

Strand: Reverse

Name: yliC [C]

Synonym: Ping_3159

Alternate gene names: 119946766

Gene position: 3890409-3889228 (Counterclockwise)

Preceding gene: 119946767

Following gene: 119946765

Centisome position: 85.32

GC content: 44.5

Gene sequence:

>1182_bases
ATGATTGCCGATTTTTTTACCAGCACCTGGTTGTTATGGGTTCTGCTCAGTGTGGCAGGCTTTCTGTTTTGGCGTAGCCG
CAGCAGTAAGTATTTTCTTTATGTGTTTAACCGTTACCTGTTGGCGTTGATGACCCTGCTAATAGTAAGCGGTATTGTTT
TTTCACTGATGGAAGTCTTACCCGGTGATTGTGCTGAAAAGTATATTGCTTATAAAAGCTCTCAAGGGGAAATGATTACT
CAGGCAGATATTGCGGCTGAAAGATCACGGATGGGGCTGGATCGTTCATTGATTGTTCGCTGGAGCAGCTGGATCACTGA
TCTGACCCTGCGAGGAGATTTGGGTTTTAGTTGTGCTAAGCGTCAGTCGGTTAATATTGCCCTGGGTGATCGCTTCTGGA
TGAGCTTTGGTTTCTGTATTGCGGGATTACTTTTTGCCTATTTGATTGCCGTACCCTTCGGTATTCTTTCAGCTTATATG
ATTAATAAACCCTGGCTGGATAAAAATCCAAAGTATAACAAAAAACAGCGCTGGATTAACTCTATCGGTTTGAGTTTTAA
CAAAGTGCTGGATCTTAAACTGCGCATGATTAGTTATCTCGGGCTGGCATTACCGAATTTCTTATTAGCCTTGAGCATTA
TTTTGCTTTACGTCTTTGCAGGTGAACCTGTGCCGACCGGTTTATTTTCCGATCAGTGGAGTGCTGAACCCTGGTTTGCT
GTGAGTGGTTTTCAGTACGGCAAGCTGACGGATTTTCTGAGTCATATATGGTTGCCTATCTTTGTAATCGGCTGGGCTGC
TACTGCATTGCAGTTACAAACAGTGCGGGCGCTGGTGGTCGATGAATCTAATAAACTTTATGTTGATGCGGCGCGTGCGC
GTGGTGTTGATGGTATGAGCCTATGGGTGGGTTATCCCGTTCGCCATTCAATTAGCCCGTTATTTAACAGTATCGGTTTT
GATTTTCAGCGGATATTTAATGATCTGCCGATCGTCGCAATTGTTATTGGCATGACCGATTCAGCGGCACTGTTAATTGA
AGCCTTGGCCATGACCAATGATCAGGAGATGGCAGCAGCGATTTTATTTCTGGTAGCCCTGGTGGTTATATCGATGAATT
TCATTACTGATATTGTTCTGGCAGCGGTCGATCCGCGTGTCCGTAATAGTGTACTTGGGTAA

Upstream 100 bases:

>100_bases
TTGAGTAAATAATGTAGATTATCACTCCTTAGTTTGAAACACCGAAAAGAGAGAACTAACACTTCTCTCTTTTAGTTATT
TTTGTTTACCGAGTCCAATT

Downstream 100 bases:

>100_bases
ATTATGATAAGCAGTGTATTAGCCCGTTTCGGGCCAAAAGTTAAAAAATCGCAGGATGAATCTTACTATACAGCAGGCCA
GCTGGCATTAATTAAAGCCC

Product: ABC transporter binding protein inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MIADFFTSTWLLWVLLSVAGFLFWRSRSSKYFLYVFNRYLLALMTLLIVSGIVFSLMEVLPGDCAEKYIAYKSSQGEMIT
QADIAAERSRMGLDRSLIVRWSSWITDLTLRGDLGFSCAKRQSVNIALGDRFWMSFGFCIAGLLFAYLIAVPFGILSAYM
INKPWLDKNPKYNKKQRWINSIGLSFNKVLDLKLRMISYLGLALPNFLLALSIILLYVFAGEPVPTGLFSDQWSAEPWFA
VSGFQYGKLTDFLSHIWLPIFVIGWAATALQLQTVRALVVDESNKLYVDAARARGVDGMSLWVGYPVRHSISPLFNSIGF
DFQRIFNDLPIVAIVIGMTDSAALLIEALAMTNDQEMAAAILFLVALVVISMNFITDIVLAAVDPRVRNSVLG

Sequences:

>Translated_393_residues
MIADFFTSTWLLWVLLSVAGFLFWRSRSSKYFLYVFNRYLLALMTLLIVSGIVFSLMEVLPGDCAEKYIAYKSSQGEMIT
QADIAAERSRMGLDRSLIVRWSSWITDLTLRGDLGFSCAKRQSVNIALGDRFWMSFGFCIAGLLFAYLIAVPFGILSAYM
INKPWLDKNPKYNKKQRWINSIGLSFNKVLDLKLRMISYLGLALPNFLLALSIILLYVFAGEPVPTGLFSDQWSAEPWFA
VSGFQYGKLTDFLSHIWLPIFVIGWAATALQLQTVRALVVDESNKLYVDAARARGVDGMSLWVGYPVRHSISPLFNSIGF
DFQRIFNDLPIVAIVIGMTDSAALLIEALAMTNDQEMAAAILFLVALVVISMNFITDIVLAAVDPRVRNSVLG
>Mature_393_residues
MIADFFTSTWLLWVLLSVAGFLFWRSRSSKYFLYVFNRYLLALMTLLIVSGIVFSLMEVLPGDCAEKYIAYKSSQGEMIT
QADIAAERSRMGLDRSLIVRWSSWITDLTLRGDLGFSCAKRQSVNIALGDRFWMSFGFCIAGLLFAYLIAVPFGILSAYM
INKPWLDKNPKYNKKQRWINSIGLSFNKVLDLKLRMISYLGLALPNFLLALSIILLYVFAGEPVPTGLFSDQWSAEPWFA
VSGFQYGKLTDFLSHIWLPIFVIGWAATALQLQTVRALVVDESNKLYVDAARARGVDGMSLWVGYPVRHSISPLFNSIGF
DFQRIFNDLPIVAIVIGMTDSAALLIEALAMTNDQEMAAAILFLVALVVISMNFITDIVLAAVDPRVRNSVLG

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=357, Percent_Identity=25.7703081232493, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1789888, Length=357, Percent_Identity=22.96918767507, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1789965, Length=369, Percent_Identity=20.8672086720867, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788504, Length=358, Percent_Identity=25.6983240223464, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787761, Length=287, Percent_Identity=26.1324041811847, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787550, Length=295, Percent_Identity=21.3559322033898, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787497, Length=357, Percent_Identity=19.6078431372549, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44068; Mature: 44068

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADFFTSTWLLWVLLSVAGFLFWRSRSSKYFLYVFNRYLLALMTLLIVSGIVFSLMEVL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGDCAEKYIAYKSSQGEMITQADIAAERSRMGLDRSLIVRWSSWITDLTLRGDLGFSCAK
CCHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCHHC
RQSVNIALGDRFWMSFGFCIAGLLFAYLIAVPFGILSAYMINKPWLDKNPKYNKKQRWIN
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SIGLSFNKVLDLKLRMISYLGLALPNFLLALSIILLYVFAGEPVPTGLFSDQWSAEPWFA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
VSGFQYGKLTDFLSHIWLPIFVIGWAATALQLQTVRALVVDESNKLYVDAARARGVDGMS
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHCCCCCCE
LWVGYPVRHSISPLFNSIGFDFQRIFNDLPIVAIVIGMTDSAALLIEALAMTNDQEMAAA
EEECCCHHHHHHHHHHHHCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHH
ILFLVALVVISMNFITDIVLAAVDPRVRNSVLG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MIADFFTSTWLLWVLLSVAGFLFWRSRSSKYFLYVFNRYLLALMTLLIVSGIVFSLMEVL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGDCAEKYIAYKSSQGEMITQADIAAERSRMGLDRSLIVRWSSWITDLTLRGDLGFSCAK
CCHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCHHC
RQSVNIALGDRFWMSFGFCIAGLLFAYLIAVPFGILSAYMINKPWLDKNPKYNKKQRWIN
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SIGLSFNKVLDLKLRMISYLGLALPNFLLALSIILLYVFAGEPVPTGLFSDQWSAEPWFA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
VSGFQYGKLTDFLSHIWLPIFVIGWAATALQLQTVRALVVDESNKLYVDAARARGVDGMS
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHCCCCCCE
LWVGYPVRHSISPLFNSIGFDFQRIFNDLPIVAIVIGMTDSAALLIEALAMTNDQEMAAA
EEECCCHHHHHHHHHHHHCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHH
ILFLVALVVISMNFITDIVLAAVDPRVRNSVLG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA