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The map label for this gene is xni

Identifier: 119946402

GI number: 119946402

Start: 3415378

End: 3416166

Strand: Direct

Name: xni

Synonym: Ping_2776

Alternate gene names: 119946402

Gene position: 3415378-3416166 (Clockwise)

Preceding gene: 119946401

Following gene: 119946403

Centisome position: 74.91

GC content: 38.28

Gene sequence:

>789_bases
ATGATATCAACCCTATTAATCATAGATGCAATGAACCTTGTTCGACGCATCTATGCGGTGCAGCAAAAACAGCATGGAGA
TACGCCCACAGCACTGATTGCGACACAAAGCACAACCACCAATGCCCTTAAAAAACTGTTGCGTATTCATCAGCCAACCC
ACGCTATTTGTGTCTTTGACAGTCATGCCCCCAGTTGGCGTCATCAAATTTATCCTGAATATAAACAGGGACGAAAACCC
ATTCCCGAACTTCTCAAACAAGGTTTACCGGCTATTCAAGAGCAATTTTTTGATCTTGGTATTGACTCTTTAGTGACCGA
AGAAGATGAGGCCGACGATCTGATTGCCTGCCTTGCTGATAAAATCGCAAAACAACAACAAAAATGTATTATTGTCTCGA
CCGATAAAGGATTTTATCAATTATTAAATGAATCTATTCAACTTTATGATTATTTTCAAAACAGCTTTGTCATCCGCCAA
CAAGTCCACCAAAAAATGGGGATAAGCATCCAGCAACTTAATGATTATTGGGCTATTACCGGTATTTCAAGCAGTGCTAT
TAAAGGTGTTGAAGGTATTGGCAGTAAAGGCGCATTATCCCTTTTACAACAATACGGCAGTTTAAATAATATCTTTCAAC
AAGCAGAGGATTCCAACAACAAACTGCTAACGAAAATAAAATCCCAGCAAAGTAATGCAATATTAGCCAAACAGCTGGTG
ACATTAAAAACAGATATTAAGCTCGGTTTTAATTTAAAAGATTTACGTTATACCGATTCCACTGATTAG

Upstream 100 bases:

>100_bases
AAAATAAGTTACAGTTAAGGTAACAAGCTGTTAAGCATTTTATTATCTTTTATTTAAAAGCTAAAAATAGCAATAACTGA
CTCTTCAGGCCCTTTAAAAA

Downstream 100 bases:

>100_bases
GTGAGCGATTAAGGTGCTTATACGTTGGAATTTTGCCCTGACAGCGTGTCGATAAGACGTTCGTGAGAGTCACGCTCTCT
CAACAGCAACAGCAAGAGCA

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MISTLLIIDAMNLVRRIYAVQQKQHGDTPTALIATQSTTTNALKKLLRIHQPTHAICVFDSHAPSWRHQIYPEYKQGRKP
IPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLADKIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQ
QVHQKMGISIQQLNDYWAITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTKIKSQQSNAILAKQLV
TLKTDIKLGFNLKDLRYTDSTD

Sequences:

>Translated_262_residues
MISTLLIIDAMNLVRRIYAVQQKQHGDTPTALIATQSTTTNALKKLLRIHQPTHAICVFDSHAPSWRHQIYPEYKQGRKP
IPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLADKIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQ
QVHQKMGISIQQLNDYWAITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTKIKSQQSNAILAKQLV
TLKTDIKLGFNLKDLRYTDSTD
>Mature_262_residues
MISTLLIIDAMNLVRRIYAVQQKQHGDTPTALIATQSTTTNALKKLLRIHQPTHAICVFDSHAPSWRHQIYPEYKQGRKP
IPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLADKIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQ
QVHQKMGISIQQLNDYWAITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTKIKSQQSNAILAKQLV
TLKTDIKLGFNLKDLRYTDSTD

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain

Homologues:

Organism=Escherichia coli, GI226510970, Length=258, Percent_Identity=39.922480620155, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1790294, Length=263, Percent_Identity=28.5171102661597, Blast_Score=114, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XNI_PSYIN (A1SYB8)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944082.1
- ProteinModelPortal:   A1SYB8
- SMR:   A1SYB8
- STRING:   A1SYB8
- GeneID:   4627061
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2776
- eggNOG:   COG0258
- HOGENOM:   HBG701384
- OMA:   HGEKVTI
- PhylomeDB:   A1SYB8
- ProtClustDB:   PRK09482
- BioCyc:   PING357804:PING_2776-MONOMER
- HAMAP:   MF_01192
- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR002421
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895
- SMART:   SM00475
- SMART:   SM00279

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; SSF47807 5_3_exo_C

EC number: 3.1.11.- [C]

Molecular weight: Translated: 29496; Mature: 29496

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTLLIIDAMNLVRRIYAVQQKQHGDTPTALIATQSTTTNALKKLLRIHQPTHAICVFD
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEC
SHAPSWRHQIYPEYKQGRKPIPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLAD
CCCCCHHHHCCCCHHCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHH
KIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQQVHQKMGISIQQLNDYWAIT
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEE
GISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTKIKSQQSNAILAKQLV
CCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
TLKTDIKLGFNLKDLRYTDSTD
HHHHCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MISTLLIIDAMNLVRRIYAVQQKQHGDTPTALIATQSTTTNALKKLLRIHQPTHAICVFD
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEC
SHAPSWRHQIYPEYKQGRKPIPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIACLAD
CCCCCHHHHCCCCHHCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHH
KIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQQVHQKMGISIQQLNDYWAIT
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEE
GISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAEDSNNKLLTKIKSQQSNAILAKQLV
CCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
TLKTDIKLGFNLKDLRYTDSTD
HHHHCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA