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The map label for this gene is ygdH [H]

Identifier: 119946401

GI number: 119946401

Start: 3413932

End: 3415284

Strand: Direct

Name: ygdH [H]

Synonym: Ping_2775

Alternate gene names: 119946401

Gene position: 3413932-3415284 (Clockwise)

Preceding gene: 119946400

Following gene: 119946402

Centisome position: 74.87

GC content: 40.06

Gene sequence:

>1353_bases
ATGATCGCCCATATAAACCCTATCGGAAGCATGGCTTTATTATCGCAACTTGAAGTGAATGAATTACAAAAAAATGCAGA
TTGCGATATTTATAATGTATTTCGTAACTGCTCCCTTGCAGTGCTTAATTCAGGCAGCCATACGGACAGCAGCAAAGAAA
TTTTAGAAAAATATAAAACGTTTGAAATTAAAGTGTTACATCAGGAAAAAGGCGTAAAAATCGAGCTGCACAACCCGCCG
GAAGACGCCTTTATTGATGGCCAGCTGATCAAGGGTATTCAGGAGCATCTCTTTGCGGTATTACGCGATCTGCTATATGT
TAATACCCAAATTAGAATCGGGGGTGAAAATGAAAATCAGTCCTCGCAAATCACTAGTTTAGTTTTTTCTATTTTACGTA
ATGCGAGTATTTTACAAGCAGGTGTAGAGCCGAATATTATTGTCTGTTGGGGCGGGCATTCGATAAGATCAGAGGAATAT
GATTATACTCGGGAAGTGGGCAGCCAATTAGGATTAAGAGAGCTTAATATCTGTACCGGTTGTGGCCCCGGTGCGATGGA
AGGTCCGATGAAAGGGGCTGCCATCGGCCATGCTAAACAACGGGTTAATAATGGTCGACATATCGGTATTACAGAGCCGG
GTATTATCGCCGCTGAGCCACCTAATCCAATTGTTAATGAGTTAGTTATTTTACCCGATATTGAAAAACGTCTTGAGGCA
TTTATACGCATCGCACACGGTATTGTTATTTTCCCCGGCGGCCCGGGAACCGCAGAGGAGTTATTGTATCTGTTAGGCAT
AATGATGCACCCGGAAAATAAACGTCAACCTTTCCCTATTATTTTGACCGGCCCCAAAGGCAGTGAATCCTATTTTAAGG
CAATCGATAAATTTATCGCCGGCACCCTAGGTGAAGAGGCCCAGTCACATTATCAAATAATTATTGCAGATCCTGCTTTA
GTCGCGCAAACACTCAAAAAATCGATGTCAAAAGTCACTGAATATCGCCGTGCTATTGGTGATGCTTTTTCGTTTAACTG
GTCACTTAAAATAACGGAATCCTTCCAAGAACCTTTTTATCCTAACCATACTAATATGAAAAATTTAGTATTAAACAATG
AACAACCAAGTGAACAATTGGCATCAAATTTACGCCGTGTTTTTTCAGGTATAGTTGGTGGCAACGTCAAAGATGAAGGC
ATTAAATCGATAGAAAAATACGGTCCCTTTGAACTTAAAGGTGATCCGCAGTTAATGAAAAAAGTAGATGTTTTATTAGA
AAGTTTTATTAAACAGGGACGGATGAAATTACCGGGTACGGTTTACACCCCTTGTTATAAGATAATAAAATAA

Upstream 100 bases:

>100_bases
AGCGTACTTTTTATAAATCAAAAAGTGTTAAGGAGATAATCACCTCCTTACTCCCGTATCCTCAGTTAGCTGGATATAGA
TCAATATACAAGGAGATTCC

Downstream 100 bases:

>100_bases
GTTACAGTTAAGGTAACAAGCTGTTAAGCATTTTATTATCTTTTATTTAAAAGCTAAAAATAGCAATAACTGACTCTTCA
GGCCCTTTAAAAAATGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MIAHINPIGSMALLSQLEVNELQKNADCDIYNVFRNCSLAVLNSGSHTDSSKEILEKYKTFEIKVLHQEKGVKIELHNPP
EDAFIDGQLIKGIQEHLFAVLRDLLYVNTQIRIGGENENQSSQITSLVFSILRNASILQAGVEPNIIVCWGGHSIRSEEY
DYTREVGSQLGLRELNICTGCGPGAMEGPMKGAAIGHAKQRVNNGRHIGITEPGIIAAEPPNPIVNELVILPDIEKRLEA
FIRIAHGIVIFPGGPGTAEELLYLLGIMMHPENKRQPFPIILTGPKGSESYFKAIDKFIAGTLGEEAQSHYQIIIADPAL
VAQTLKKSMSKVTEYRRAIGDAFSFNWSLKITESFQEPFYPNHTNMKNLVLNNEQPSEQLASNLRRVFSGIVGGNVKDEG
IKSIEKYGPFELKGDPQLMKKVDVLLESFIKQGRMKLPGTVYTPCYKIIK

Sequences:

>Translated_450_residues
MIAHINPIGSMALLSQLEVNELQKNADCDIYNVFRNCSLAVLNSGSHTDSSKEILEKYKTFEIKVLHQEKGVKIELHNPP
EDAFIDGQLIKGIQEHLFAVLRDLLYVNTQIRIGGENENQSSQITSLVFSILRNASILQAGVEPNIIVCWGGHSIRSEEY
DYTREVGSQLGLRELNICTGCGPGAMEGPMKGAAIGHAKQRVNNGRHIGITEPGIIAAEPPNPIVNELVILPDIEKRLEA
FIRIAHGIVIFPGGPGTAEELLYLLGIMMHPENKRQPFPIILTGPKGSESYFKAIDKFIAGTLGEEAQSHYQIIIADPAL
VAQTLKKSMSKVTEYRRAIGDAFSFNWSLKITESFQEPFYPNHTNMKNLVLNNEQPSEQLASNLRRVFSGIVGGNVKDEG
IKSIEKYGPFELKGDPQLMKKVDVLLESFIKQGRMKLPGTVYTPCYKIIK
>Mature_450_residues
MIAHINPIGSMALLSQLEVNELQKNADCDIYNVFRNCSLAVLNSGSHTDSSKEILEKYKTFEIKVLHQEKGVKIELHNPP
EDAFIDGQLIKGIQEHLFAVLRDLLYVNTQIRIGGENENQSSQITSLVFSILRNASILQAGVEPNIIVCWGGHSIRSEEY
DYTREVGSQLGLRELNICTGCGPGAMEGPMKGAAIGHAKQRVNNGRHIGITEPGIIAAEPPNPIVNELVILPDIEKRLEA
FIRIAHGIVIFPGGPGTAEELLYLLGIMMHPENKRQPFPIILTGPKGSESYFKAIDKFIAGTLGEEAQSHYQIIIADPAL
VAQTLKKSMSKVTEYRRAIGDAFSFNWSLKITESFQEPFYPNHTNMKNLVLNNEQPSEQLASNLRRVFSGIVGGNVKDEG
IKSIEKYGPFELKGDPQLMKKVDVLLESFIKQGRMKLPGTVYTPCYKIIK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=62.6106194690266, Blast_Score=606, Evalue=1e-174,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 49903; Mature: 49903

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAHINPIGSMALLSQLEVNELQKNADCDIYNVFRNCSLAVLNSGSHTDSSKEILEKYKT
CCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCC
FEIKVLHQEKGVKIELHNPPEDAFIDGQLIKGIQEHLFAVLRDLLYVNTQIRIGGENENQ
EEEEEEECCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCH
SSQITSLVFSILRNASILQAGVEPNIIVCWGGHSIRSEEYDYTREVGSQLGLRELNICTG
HHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECC
CGPGAMEGPMKGAAIGHAKQRVNNGRHIGITEPGIIAAEPPNPIVNELVILPDIEKRLEA
CCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCEEEECCCCHHHHCEEECCCHHHHHHH
FIRIAHGIVIFPGGPGTAEELLYLLGIMMHPENKRQPFPIILTGPKGSESYFKAIDKFIA
HHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
GTLGEEAQSHYQIIIADPALVAQTLKKSMSKVTEYRRAIGDAFSFNWSLKITESFQEPFY
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEHHHCCCCC
PNHTNMKNLVLNNEQPSEQLASNLRRVFSGIVGGNVKDEGIKSIEKYGPFELKGDPQLMK
CCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCHHHHH
KVDVLLESFIKQGRMKLPGTVYTPCYKIIK
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MIAHINPIGSMALLSQLEVNELQKNADCDIYNVFRNCSLAVLNSGSHTDSSKEILEKYKT
CCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCC
FEIKVLHQEKGVKIELHNPPEDAFIDGQLIKGIQEHLFAVLRDLLYVNTQIRIGGENENQ
EEEEEEECCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCH
SSQITSLVFSILRNASILQAGVEPNIIVCWGGHSIRSEEYDYTREVGSQLGLRELNICTG
HHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECC
CGPGAMEGPMKGAAIGHAKQRVNNGRHIGITEPGIIAAEPPNPIVNELVILPDIEKRLEA
CCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCEEEECCCCHHHHCEEECCCHHHHHHH
FIRIAHGIVIFPGGPGTAEELLYLLGIMMHPENKRQPFPIILTGPKGSESYFKAIDKFIA
HHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
GTLGEEAQSHYQIIIADPALVAQTLKKSMSKVTEYRRAIGDAFSFNWSLKITESFQEPFY
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEHHHCCCCC
PNHTNMKNLVLNNEQPSEQLASNLRRVFSGIVGGNVKDEGIKSIEKYGPFELKGDPQLMK
CCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCHHHHH
KVDVLLESFIKQGRMKLPGTVYTPCYKIIK
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]