Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946400
Identifier: 119946400
GI number: 119946400
Start: 3411484
End: 3413712
Strand: Direct
Name: 119946400
Synonym: Ping_2774
Alternate gene names: NA
Gene position: 3411484-3413712 (Clockwise)
Preceding gene: 119946399
Following gene: 119946401
Centisome position: 74.82
GC content: 38.0
Gene sequence:
>2229_bases ATGAGATATGTCAGTCAATACTTTCGCGCTGTTTGTGCGCTATTTTTAGTTCAGGTCAGTCAATCAAGCGGGGCGTTGGA ATTAACCGATCCTACGCTCCCTAATACACTAAAAAATGCTTTTTCATTACGTGATACTGCCCCGCGCAGCTGTATTAATA CGGCAATAATCTATATCAACACGCCGCAAAACACGACTGCGCGAACTAAGCGGCAAAACAACAAGAATTTCGCAATACAA TTACAGGCATATTGTTATGCTCAACTTGGGGAATACTCAAAAGCGCTGGATTTATTGCAGCCTATTTTAAAAAAACCTGG CAGTAAAAACGATCAAATAGAAACATTGAATATTATTGCGCTGGAAATTCCTCAGGAAGAACGCCCGCAATTAAGTAATA CCGATCTGATTAAAAGACTCAATGAACAGATCGTAACACCCCAATCGCCATTAATCAGTTCAATGAACTTAACTATTACC AGATTATTAACCGTCGTTAAATTGTATTTAGAAGAAAATAATTATCAGGATGCCCATCGCGTTTTAGAACAAACCAAAGA CTTGCTGAAAAGCAATAACAATCATAATAACAATCTACATGCCTGGTTAGCTTATTATCAGGGTCTCTATTTTGATCAGA TTAAACAGGAGCAATTAGCCAGTTTACATTTTCTGTCGGCAGACAGGCTAGCCGATCAACATGGTTTTATTAAACTCAGT GGCCAAGTAAAAAACAGTATTATTTTAATGTACCAAAATAAGTATCGCTTCACCCGGGCTTTAGATTTTTCCGGCAGAAG AGTTGAGCTTTATATGAGGACTAAAAACACCCCCAAGCAAATCGACAGTATTATTCAATTTGCCGTTTTAAAACGGCAAA ATAATGAACACAACCAAGCCTTAATTTACCTGTTTAATGCGTTGGAATTGATTGAAGAAAACTCATACGGTGCACTGTTA GCTGTTGTCTATCTTGAAATAGGCCGAACTTACGCTGAAAAAGGAAGTAATGAAAAGCATCGGGAAGAGCTGGCACTGGC GCGAAAATATTTGCAGAATGCACATTTTCATTTCAAGCGATTAAATAAAGTACAGTTTCAAATAGAAAGTCTTTTACTGC TGGCCAAATTGAACCTTTTCAATGAGTCCCCTGCTCCGGCTATTTTACAATTAGAAAAAGTGTTACAACTGGCAGCACAA AATAACCCCTTATTACGTATCCAAGCCCATGAAATGCTTGCATTAAGCTATGAAATAACCGGCCATCCTCAGCTCGCTAT TTTACATTTTAAACATTTTCACTCTTTACAGAATAAGATTAAAGAAAACGCATTTAAATTACAACAGCTGCAGATTAACG AACAGCTGCAACGCATTGATCAGGTGCAACAGCAAAATAGATTAGAAATCCAAAACACAGCATTACTGACACAATCCAAC TTTTATAAAACATTAAGTTATACAGCAATCATTCTATTTATTCTGTCAGCACTGATGCTTTTATCCAGAACAAAATGCTA CTATAAACTGCGAGCGCTAGAGAAAAAAACACAACAACGACTTGCCTTTCATGCGCGCACTAAACTGCCCACGCAAGAAA ATAATATTAATGACTTTACGACTCTCTATAACGGCATGCCCCTATTTTACGCATTGGTTAATGTGCCATTTTTAACTCAG CTTAATGAGTTGTATGGCGTCAGATTGGCAGATAAAATAGAAGCAAAACTTGGCGAAACATTGAAAAGGCACTTTGCTGG CAGGGTTAACATTTTCCATTTACGTGATAATCAAATTTTATTTATTAGCAAGCAGACTAACTACCCAAATGCAGCCGGCT TAGCAGATAAAATTGAACAATTTTTTAATCACTTCACGACCCAATACCATTTACCAAAAACGATTTCGACAGGCATTGTC GCGTACCCGTTTTTAAACAATGCCAGCCGGGCCATCAGCGCCTCCCAGACTTTAAATCTAAATAGTTTGGCACTTTTTGC CGCAAGCCAAATTAGCAGTTCAAAACAGCAAAACAGCTGGGTTGAACTCTATGCCATTGATAATTTGCAACCCGCTTTTT TTGATGGCGATTTATGGCGATTAGGCCAAATTGCGATTGCTAAAGGACTGGTCAAAATCCATTCCTGCAACAGGGATTAT CTGTTTATTTGGCCTGAACTTAAAAATCCAAAAACAGTTGAAGAGATCAATCAACGGTTGCAAGACTAA
Upstream 100 bases:
>100_bases TACTCGCCGGGGCGGATTAGATATTAACCCGCTGCGTACCACGGAACACATTAATGAGATTAATAATCTTCGTTTATTAC GACAATAAAAATTAGCTGTT
Downstream 100 bases:
>100_bases TGCCTAGCGAGATAGCTGTAAAAACAAAACATTATTAAATGTAATTACCGTAACATGGAAATTATGCATATTTTTCTTAT ACTTACATACCCAGACGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: TPR-Repeat-Containing Protein
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MRYVSQYFRAVCALFLVQVSQSSGALELTDPTLPNTLKNAFSLRDTAPRSCINTAIIYINTPQNTTARTKRQNNKNFAIQ LQAYCYAQLGEYSKALDLLQPILKKPGSKNDQIETLNIIALEIPQEERPQLSNTDLIKRLNEQIVTPQSPLISSMNLTIT RLLTVVKLYLEENNYQDAHRVLEQTKDLLKSNNNHNNNLHAWLAYYQGLYFDQIKQEQLASLHFLSADRLADQHGFIKLS GQVKNSIILMYQNKYRFTRALDFSGRRVELYMRTKNTPKQIDSIIQFAVLKRQNNEHNQALIYLFNALELIEENSYGALL AVVYLEIGRTYAEKGSNEKHREELALARKYLQNAHFHFKRLNKVQFQIESLLLLAKLNLFNESPAPAILQLEKVLQLAAQ NNPLLRIQAHEMLALSYEITGHPQLAILHFKHFHSLQNKIKENAFKLQQLQINEQLQRIDQVQQQNRLEIQNTALLTQSN FYKTLSYTAIILFILSALMLLSRTKCYYKLRALEKKTQQRLAFHARTKLPTQENNINDFTTLYNGMPLFYALVNVPFLTQ LNELYGVRLADKIEAKLGETLKRHFAGRVNIFHLRDNQILFISKQTNYPNAAGLADKIEQFFNHFTTQYHLPKTISTGIV AYPFLNNASRAISASQTLNLNSLALFAASQISSSKQQNSWVELYAIDNLQPAFFDGDLWRLGQIAIAKGLVKIHSCNRDY LFIWPELKNPKTVEEINQRLQD
Sequences:
>Translated_742_residues MRYVSQYFRAVCALFLVQVSQSSGALELTDPTLPNTLKNAFSLRDTAPRSCINTAIIYINTPQNTTARTKRQNNKNFAIQ LQAYCYAQLGEYSKALDLLQPILKKPGSKNDQIETLNIIALEIPQEERPQLSNTDLIKRLNEQIVTPQSPLISSMNLTIT RLLTVVKLYLEENNYQDAHRVLEQTKDLLKSNNNHNNNLHAWLAYYQGLYFDQIKQEQLASLHFLSADRLADQHGFIKLS GQVKNSIILMYQNKYRFTRALDFSGRRVELYMRTKNTPKQIDSIIQFAVLKRQNNEHNQALIYLFNALELIEENSYGALL AVVYLEIGRTYAEKGSNEKHREELALARKYLQNAHFHFKRLNKVQFQIESLLLLAKLNLFNESPAPAILQLEKVLQLAAQ NNPLLRIQAHEMLALSYEITGHPQLAILHFKHFHSLQNKIKENAFKLQQLQINEQLQRIDQVQQQNRLEIQNTALLTQSN FYKTLSYTAIILFILSALMLLSRTKCYYKLRALEKKTQQRLAFHARTKLPTQENNINDFTTLYNGMPLFYALVNVPFLTQ LNELYGVRLADKIEAKLGETLKRHFAGRVNIFHLRDNQILFISKQTNYPNAAGLADKIEQFFNHFTTQYHLPKTISTGIV AYPFLNNASRAISASQTLNLNSLALFAASQISSSKQQNSWVELYAIDNLQPAFFDGDLWRLGQIAIAKGLVKIHSCNRDY LFIWPELKNPKTVEEINQRLQD >Mature_742_residues MRYVSQYFRAVCALFLVQVSQSSGALELTDPTLPNTLKNAFSLRDTAPRSCINTAIIYINTPQNTTARTKRQNNKNFAIQ LQAYCYAQLGEYSKALDLLQPILKKPGSKNDQIETLNIIALEIPQEERPQLSNTDLIKRLNEQIVTPQSPLISSMNLTIT RLLTVVKLYLEENNYQDAHRVLEQTKDLLKSNNNHNNNLHAWLAYYQGLYFDQIKQEQLASLHFLSADRLADQHGFIKLS GQVKNSIILMYQNKYRFTRALDFSGRRVELYMRTKNTPKQIDSIIQFAVLKRQNNEHNQALIYLFNALELIEENSYGALL AVVYLEIGRTYAEKGSNEKHREELALARKYLQNAHFHFKRLNKVQFQIESLLLLAKLNLFNESPAPAILQLEKVLQLAAQ NNPLLRIQAHEMLALSYEITGHPQLAILHFKHFHSLQNKIKENAFKLQQLQINEQLQRIDQVQQQNRLEIQNTALLTQSN FYKTLSYTAIILFILSALMLLSRTKCYYKLRALEKKTQQRLAFHARTKLPTQENNINDFTTLYNGMPLFYALVNVPFLTQ LNELYGVRLADKIEAKLGETLKRHFAGRVNIFHLRDNQILFISKQTNYPNAAGLADKIEQFFNHFTTQYHLPKTISTGIV AYPFLNNASRAISASQTLNLNSLALFAASQISSSKQQNSWVELYAIDNLQPAFFDGDLWRLGQIAIAKGLVKIHSCNRDY LFIWPELKNPKTVEEINQRLQD
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85567; Mature: 85567
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYVSQYFRAVCALFLVQVSQSSGALELTDPTLPNTLKNAFSLRDTAPRSCINTAIIYIN CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHCEEEEEEE TPQNTTARTKRQNNKNFAIQLQAYCYAQLGEYSKALDLLQPILKKPGSKNDQIETLNIIA CCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE LEIPQEERPQLSNTDLIKRLNEQIVTPQSPLISSMNLTITRLLTVVKLYLEENNYQDAHR EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHH VLEQTKDLLKSNNNHNNNLHAWLAYYQGLYFDQIKQEQLASLHFLSADRLADQHGFIKLS HHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GQVKNSIILMYQNKYRFTRALDFSGRRVELYMRTKNTPKQIDSIIQFAVLKRQNNEHNQA CCCCCEEEEEEECCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHH LIYLFNALELIEENSYGALLAVVYLEIGRTYAEKGSNEKHREELALARKYLQNAHFHFKR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LNKVQFQIESLLLLAKLNLFNESPAPAILQLEKVLQLAAQNNPLLRIQAHEMLALSYEIT HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEEEC GHPQLAILHFKHFHSLQNKIKENAFKLQQLQINEQLQRIDQVQQQNRLEIQNTALLTQSN CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHEEEECCC FYKTLSYTAIILFILSALMLLSRTKCYYKLRALEKKTQQRLAFHARTKLPTQENNINDFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH TLYNGMPLFYALVNVPFLTQLNELYGVRLADKIEAKLGETLKRHFAGRVNIFHLRDNQIL HHHCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEE FISKQTNYPNAAGLADKIEQFFNHFTTQYHLPKTISTGIVAYPFLNNASRAISASQTLNL EEEECCCCCCCCCHHHHHHHHHHHHCCCEECCCHHCCCEEEEECCCCCHHHCCHHHCCCC NSLALFAASQISSSKQQNSWVELYAIDNLQPAFFDGDLWRLGQIAIAKGLVKIHSCNRDY CHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCE LFIWPELKNPKTVEEINQRLQD EEEECCCCCCCHHHHHHHHHCC >Mature Secondary Structure MRYVSQYFRAVCALFLVQVSQSSGALELTDPTLPNTLKNAFSLRDTAPRSCINTAIIYIN CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHCEEEEEEE TPQNTTARTKRQNNKNFAIQLQAYCYAQLGEYSKALDLLQPILKKPGSKNDQIETLNIIA CCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE LEIPQEERPQLSNTDLIKRLNEQIVTPQSPLISSMNLTITRLLTVVKLYLEENNYQDAHR EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHH VLEQTKDLLKSNNNHNNNLHAWLAYYQGLYFDQIKQEQLASLHFLSADRLADQHGFIKLS HHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GQVKNSIILMYQNKYRFTRALDFSGRRVELYMRTKNTPKQIDSIIQFAVLKRQNNEHNQA CCCCCEEEEEEECCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHH LIYLFNALELIEENSYGALLAVVYLEIGRTYAEKGSNEKHREELALARKYLQNAHFHFKR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LNKVQFQIESLLLLAKLNLFNESPAPAILQLEKVLQLAAQNNPLLRIQAHEMLALSYEIT HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEEEC GHPQLAILHFKHFHSLQNKIKENAFKLQQLQINEQLQRIDQVQQQNRLEIQNTALLTQSN CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHEEEECCC FYKTLSYTAIILFILSALMLLSRTKCYYKLRALEKKTQQRLAFHARTKLPTQENNINDFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH TLYNGMPLFYALVNVPFLTQLNELYGVRLADKIEAKLGETLKRHFAGRVNIFHLRDNQIL HHHCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEE FISKQTNYPNAAGLADKIEQFFNHFTTQYHLPKTISTGIVAYPFLNNASRAISASQTLNL EEEECCCCCCCCCHHHHHHHHHHHHCCCEECCCHHCCCEEEEECCCCCHHHCCHHHCCCC NSLALFAASQISSSKQQNSWVELYAIDNLQPAFFDGDLWRLGQIAIAKGLVKIHSCNRDY CHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCE LFIWPELKNPKTVEEINQRLQD EEEECCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA