Click here to switch to the map view.

The map label for this gene is yqfA [H]

Identifier: 119944886

GI number: 119944886

Start: 1418079

End: 1418705

Strand: Direct

Name: yqfA [H]

Synonym: Ping_1130

Alternate gene names: 119944886

Gene position: 1418079-1418705 (Clockwise)

Preceding gene: 119944885

Following gene: 119944888

Centisome position: 31.1

GC content: 40.03

Gene sequence:

>627_bases
ATGTATTACGGTGAGAGACTCAATAGCATCACGCATCTGGTGGGGGCGGTTTTAGCCCTCATTGGTTTTGGTGTATTATT
AACACTGGCTATGCAAGAGAATAATTGGCGAATATTGGTCAGTTTTACTATTTTTGGCTTTACCCTTGTGCTGCTTTATT
CTATGTCTACTTTGTATCACAGCTTGCACTCTCCGAAACTTAAAAAAATATTCCAGAAGCTCGATCACATCTCAATTTAC
CTGTTAATCGCAGGCACCTATACACCTTACATGCTGGTCTCATTAGAAAATAATAACGGTCTGCTGATGCTGATAATAGT
ATGGGGATTAGCTATTATTGGTTTACTCGTCGATATGTTGGTTAGCAAACGTATTGAATGGTTACAAGTGTCAATTTATT
TGTTAATGGGCTGGATTTGCCTGTTTAATTATTCACAATTTCAGGCCGCTATCCCCGCTGCAGGGATGATTTGGCTGACC
GTTGGGGGAATAGCTTATACGGCAGGTATTCTTTTTTATATTTTGGACACGCTGAATAAATTAACCCATGCTCATGGCAT
CTGGCACCTGTTTGTTTTATCGGGCTCTATCTGCCATTTCATCTCTATTGCTGGATATGTCAGATGA

Upstream 100 bases:

>100_bases
ATAATTAAGTTAGGGTTAATGTTAACGCAAAAAATTGATTGGATTTTTATGTGGATTGTTATTAGGTTGTCTATCGTTAT
ATTATTTTATCAGCCGTGTT

Downstream 100 bases:

>100_bases
GTGAATAATTGGTTTAATAACACGATATTGAAGCAGTACTCGCATGGCGGAAGAGTTGTAAATCTAAAAAGAGAAATGAG
TTGAGCATTTCTCTTTTTTT

Product: channel protein, hemolysin III family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MYYGERLNSITHLVGAVLALIGFGVLLTLAMQENNWRILVSFTIFGFTLVLLYSMSTLYHSLHSPKLKKIFQKLDHISIY
LLIAGTYTPYMLVSLENNNGLLMLIIVWGLAIIGLLVDMLVSKRIEWLQVSIYLLMGWICLFNYSQFQAAIPAAGMIWLT
VGGIAYTAGILFYILDTLNKLTHAHGIWHLFVLSGSICHFISIAGYVR

Sequences:

>Translated_208_residues
MYYGERLNSITHLVGAVLALIGFGVLLTLAMQENNWRILVSFTIFGFTLVLLYSMSTLYHSLHSPKLKKIFQKLDHISIY
LLIAGTYTPYMLVSLENNNGLLMLIIVWGLAIIGLLVDMLVSKRIEWLQVSIYLLMGWICLFNYSQFQAAIPAAGMIWLT
VGGIAYTAGILFYILDTLNKLTHAHGIWHLFVLSGSICHFISIAGYVR
>Mature_208_residues
MYYGERLNSITHLVGAVLALIGFGVLLTLAMQENNWRILVSFTIFGFTLVLLYSMSTLYHSLHSPKLKKIFQKLDHISIY
LLIAGTYTPYMLVSLENNNGLLMLIIVWGLAIIGLLVDMLVSKRIEWLQVSIYLLMGWICLFNYSQFQAAIPAAGMIWLT
VGGIAYTAGILFYILDTLNKLTHAHGIWHLFVLSGSICHFISIAGYVR

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=211, Percent_Identity=26.0663507109005, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI52630445, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789266, Length=204, Percent_Identity=36.7647058823529, Blast_Score=145, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI71996356, Length=204, Percent_Identity=28.921568627451, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640324, Length=187, Percent_Identity=27.807486631016, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23436; Mature: 23436

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYGERLNSITHLVGAVLALIGFGVLLTLAMQENNWRILVSFTIFGFTLVLLYSMSTLYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHH
SLHSPKLKKIFQKLDHISIYLLIAGTYTPYMLVSLENNNGLLMLIIVWGLAIIGLLVDML
HHCCHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHH
VSKRIEWLQVSIYLLMGWICLFNYSQFQAAIPAAGMIWLTVGGIAYTAGILFYILDTLNK
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTHAHGIWHLFVLSGSICHFISIAGYVR
HHHHHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MYYGERLNSITHLVGAVLALIGFGVLLTLAMQENNWRILVSFTIFGFTLVLLYSMSTLYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHH
SLHSPKLKKIFQKLDHISIYLLIAGTYTPYMLVSLENNNGLLMLIIVWGLAIIGLLVDML
HHCCHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHH
VSKRIEWLQVSIYLLMGWICLFNYSQFQAAIPAAGMIWLTVGGIAYTAGILFYILDTLNK
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTHAHGIWHLFVLSGSICHFISIAGYVR
HHHHHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]