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The map label for this gene is rpoE [C]

Identifier: 119944707

GI number: 119944707

Start: 1178957

End: 1179523

Strand: Direct

Name: rpoE [C]

Synonym: Ping_0946

Alternate gene names: 119944707

Gene position: 1178957-1179523 (Clockwise)

Preceding gene: 119944701

Following gene: 119944708

Centisome position: 25.86

GC content: 37.39

Gene sequence:

>567_bases
ATGAATTTATTTAATCGAAAACGAAATATAAGTTCAAAATCCTTGGTCTTTAAGGATATGAATAAAAAACAGAAACGTTA
TGAAGCACTCGTCAATATCTATAGCCCGGATCTTTACCGTTATGCATTTTGGATCTGTCGTGATCCTCATATAGCACAAG
ATTTAGTGCAGGAGACCTGCTTGCGCGCCTGGAAGAGTCTGGACAGTTTATTGGACGATAAAGCCGCTAAAGGTTGGTTA
TTTACCATATTACGTCGTGAAAATGCACGTCGTTTTGAACGCAAGCAGTTTTCTTTAGTCGATATCGCTGATAACGAAGT
GGCGGATGATCATGATTCATCAGAAGAGATGGATAAAGAATTATTACGTCGTAAAATATTGCGCTTAGCAGATGAATATA
AAGACCCTTTGTTATTGCAGCTTATCGCAGGTTTTAGCACTGAGGAAATTGCGCAGCAGCTAAATTTAAATAAAAACACC
GTATTAACGCGGTTGTTTAGAGCAAAGAATTTATTAAAATCATCATTATCAGCAACAACTAAAAGTAGTGGGGTAGCACA
TGGATGA

Upstream 100 bases:

>100_bases
TTTAAATTTTTTAAATTAATCATTTATTTTCAAGGGGTTGTGGTGAGGTTGTTTTATAAGCATTTTTTGAAAATATAATT
TTTCCTAAGAAGAGAAATAA

Downstream 100 bases:

>100_bases
TATATTATTTCGTCATACTGCAATTGCGACGCCGAATGACAAAAGTGACGAATTTTTGCGCAGGCAGTTTGATTCAGAGC
AAGATAAAACCTTTGTTGAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor SigL; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit; ECF SubfamilyRNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNLFNRKRNISSKSLVFKDMNKKQKRYEALVNIYSPDLYRYAFWICRDPHIAQDLVQETCLRAWKSLDSLLDDKAAKGWL
FTILRRENARRFERKQFSLVDIADNEVADDHDSSEEMDKELLRRKILRLADEYKDPLLLQLIAGFSTEEIAQQLNLNKNT
VLTRLFRAKNLLKSSLSATTKSSGVAHG

Sequences:

>Translated_188_residues
MNLFNRKRNISSKSLVFKDMNKKQKRYEALVNIYSPDLYRYAFWICRDPHIAQDLVQETCLRAWKSLDSLLDDKAAKGWL
FTILRRENARRFERKQFSLVDIADNEVADDHDSSEEMDKELLRRKILRLADEYKDPLLLQLIAGFSTEEIAQQLNLNKNT
VLTRLFRAKNLLKSSLSATTKSSGVAHG
>Mature_188_residues
MNLFNRKRNISSKSLVFKDMNKKQKRYEALVNIYSPDLYRYAFWICRDPHIAQDLVQETCLRAWKSLDSLLDDKAAKGWL
FTILRRENARRFERKQFSLVDIADNEVADDHDSSEEMDKELLRRKILRLADEYKDPLLLQLIAGFSTEEIAQQLNLNKNT
VLTRLFRAKNLLKSSLSATTKSSGVAHG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21925; Mature: 21925

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFNRKRNISSKSLVFKDMNKKQKRYEALVNIYSPDLYRYAFWICRDPHIAQDLVQETC
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
LRAWKSLDSLLDDKAAKGWLFTILRRENARRFERKQFSLVDIADNEVADDHDSSEEMDKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHH
LLRRKILRLADEYKDPLLLQLIAGFSTEEIAQQLNLNKNTVLTRLFRAKNLLKSSLSATT
HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KSSGVAHG
HCCCCCCC
>Mature Secondary Structure
MNLFNRKRNISSKSLVFKDMNKKQKRYEALVNIYSPDLYRYAFWICRDPHIAQDLVQETC
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
LRAWKSLDSLLDDKAAKGWLFTILRRENARRFERKQFSLVDIADNEVADDHDSSEEMDKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHH
LLRRKILRLADEYKDPLLLQLIAGFSTEEIAQQLNLNKNTVLTRLFRAKNLLKSSLSATT
HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KSSGVAHG
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA