Click here to switch to the map view.

The map label for this gene is ams [H]

Identifier: 119944090

GI number: 119944090

Start: 401986

End: 403926

Strand: Direct

Name: ams [H]

Synonym: Ping_0305

Alternate gene names: 119944090

Gene position: 401986-403926 (Clockwise)

Preceding gene: 119944089

Following gene: 119944099

Centisome position: 8.82

GC content: 39.88

Gene sequence:

>1941_bases
ATGAGCAGAATAAATATGGATTTAACCTTTGAAAGCCAGCGTACTTTAAAGCGCATTCTAGAACTTATTGATTTATCTAA
ACTGACAAAAGATGATTTAGACATTTTTTTAGCACGATTAGACAAAAATTTCCCTGCGTTATTTGCCAAGCTATATCACT
TATACGGTGATAAATATGATTTCTTTTATCATCTTCAACAACTGGTGGCCCATCTGGCAGCAGGGATTATCGCACGCTCG
GGGAAACTTAAGAAACAAGATACACTGCGTCTTAATAAGCCTGATTGGTACCGTGATCACAAAATGCTCGGCATGGCCGC
TTACGTAGATCTGTTTGCCGGTGATTTAAAGAAATTAAAAGCGAAAATTCCCTACCTTAAATCTTTAGGTATTAATTATT
TACACTTGATGCCGTTATATAAATCCCCTAAAGGCGACAGCGATGGCGGTTATGCTGTTTCAGACTATCGTGAGGTTGAT
CCTAAACTTGGCACAGAAAAAGATCTGCTCGCCCTTTCCGATGCATTATCAGCTGAGGGGATAAGTTTAGTATTGGATTT
TGTGTTTAATCATACTTCCGATGAACACCCATGGGCAGAGGCCGCCAAGGTCGGCGCTGAAGAATTTACTGATTTTTATT
ACTTTTTTGAAAAGAAACAAGAGATTGATGACTATAACCAAACCTGCCGGGAAATATTCCCGACCGTGCGTCGCGGCAGT
TTTACCTATTTAGAAGCACAAAAAAAATGGGTATGGACCACTTTTAATAGTTTTCAATGGGATCTTAACTACTCAAATCC
TGCAGTTTTTAATGCGATTACCGATGAAATGTTGTTTCTGGCAAACCTTGGTTGTGAAGGACTCCGTTTGGATGCATTGG
CTTTTATCTGGAAAGAAAAATGGACACAATGTGAGAATTTACCTAAAGCACATACGCTTATTCAAGCTTTTAATTTATGT
TTACAAATTGTTGCACCTGCTGTTGTTTTTAAATCTGAAGCCATTGTTCATCCCGATGAAGTGGCAAAGTATATTGGTAA
AGATGAGTGTCAGTTATCCTATAACCCGTTAATGATGGCCTTAATGTGGGAAAGTCTGGCAACCCGGGAAACTAAGTTAT
TGACCGCGTCATTGAAAAAAAGCTTTGCTATCTCGCCACAATGCAGCTGGGTTAATTATATTCGTTGTCATGACGATATT
GGCTGGACCTTTGATGATTCTCTTGCGCAGCAATTGGGCATTAATGGCTTTGACCACCGCCGTTTTCTTAATAATTTTTA
TACCGGGCGTTTTGAAGGATCTTTTGCACAGGGTGTGCCATTTCAAGAAAACCCCGCCACTGGAGATTGCCGAGTCTGTG
GATCACTGGCTTCATTAACTGGATTGGAAAAAGGGCTTGAACAAAATAATCAGCGCGATATTGATTTTGCATTAAAGAGG
ATCAGCCTGCTTAATAGTATTAATATGAGCATCGGTGGTATTCCTCTTATTTATCAAGGGGATGAATTGGGTATGTTGAA
TGATTACAGTTACCTTGACGATCACAGCAAAAAAGAGGATTCGCGTTGGGTTAATCGCCCGGTAATTACCGAAGAGGATA
CTAAATTAGCAGAAAAAGCGGGCTCAGCACAATTTTTCGTTAAGCAATCTTTGCAGGCGATGATAAATATTCGCCAGCAG
CATCAAGTATTCGGCATCGCGGAAACTAAGATTCTTGAAACTTATAATCCTCATCTGTTTGCTTATTGCCGAATTCATGA
AAGTGGCCAGAAAATGTTGGCTATCTGTAATTTCAGTGAAGAAAGCCAATCAGTTAACTCTTCCATTACCGACATTTTGG
CTTCTAATAAGATGGTGGATTTACTCACTGCGACTAAGGTTAAGAAAACCGCAGTGCTTGAGCTAGGCGCTTATCAGGTA
CTTTGGTTAGTGGCAGAATAG

Upstream 100 bases:

>100_bases
CGTTATTATCGATTCATATTTTAAATTGTTGGGTTTTACATTATGTTGAATAACTTTAATGGGCTATCGGAGCCAGTTGC
GGTGAATTTTAATTATCAAC

Downstream 100 bases:

>100_bases
GCTTTGTTAGCGAGCCCTGTTATTGGTTATTTACCAGCAACAGGGCATATTGTCTAGATTATGGAAAATGACTGATGGCT
TTATATTTTCTAATGGTCCC

Product: alpha amylase, catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MSRINMDLTFESQRTLKRILELIDLSKLTKDDLDIFLARLDKNFPALFAKLYHLYGDKYDFFYHLQQLVAHLAAGIIARS
GKLKKQDTLRLNKPDWYRDHKMLGMAAYVDLFAGDLKKLKAKIPYLKSLGINYLHLMPLYKSPKGDSDGGYAVSDYREVD
PKLGTEKDLLALSDALSAEGISLVLDFVFNHTSDEHPWAEAAKVGAEEFTDFYYFFEKKQEIDDYNQTCREIFPTVRRGS
FTYLEAQKKWVWTTFNSFQWDLNYSNPAVFNAITDEMLFLANLGCEGLRLDALAFIWKEKWTQCENLPKAHTLIQAFNLC
LQIVAPAVVFKSEAIVHPDEVAKYIGKDECQLSYNPLMMALMWESLATRETKLLTASLKKSFAISPQCSWVNYIRCHDDI
GWTFDDSLAQQLGINGFDHRRFLNNFYTGRFEGSFAQGVPFQENPATGDCRVCGSLASLTGLEKGLEQNNQRDIDFALKR
ISLLNSINMSIGGIPLIYQGDELGMLNDYSYLDDHSKKEDSRWVNRPVITEEDTKLAEKAGSAQFFVKQSLQAMINIRQQ
HQVFGIAETKILETYNPHLFAYCRIHESGQKMLAICNFSEESQSVNSSITDILASNKMVDLLTATKVKKTAVLELGAYQV
LWLVAE

Sequences:

>Translated_646_residues
MSRINMDLTFESQRTLKRILELIDLSKLTKDDLDIFLARLDKNFPALFAKLYHLYGDKYDFFYHLQQLVAHLAAGIIARS
GKLKKQDTLRLNKPDWYRDHKMLGMAAYVDLFAGDLKKLKAKIPYLKSLGINYLHLMPLYKSPKGDSDGGYAVSDYREVD
PKLGTEKDLLALSDALSAEGISLVLDFVFNHTSDEHPWAEAAKVGAEEFTDFYYFFEKKQEIDDYNQTCREIFPTVRRGS
FTYLEAQKKWVWTTFNSFQWDLNYSNPAVFNAITDEMLFLANLGCEGLRLDALAFIWKEKWTQCENLPKAHTLIQAFNLC
LQIVAPAVVFKSEAIVHPDEVAKYIGKDECQLSYNPLMMALMWESLATRETKLLTASLKKSFAISPQCSWVNYIRCHDDI
GWTFDDSLAQQLGINGFDHRRFLNNFYTGRFEGSFAQGVPFQENPATGDCRVCGSLASLTGLEKGLEQNNQRDIDFALKR
ISLLNSINMSIGGIPLIYQGDELGMLNDYSYLDDHSKKEDSRWVNRPVITEEDTKLAEKAGSAQFFVKQSLQAMINIRQQ
HQVFGIAETKILETYNPHLFAYCRIHESGQKMLAICNFSEESQSVNSSITDILASNKMVDLLTATKVKKTAVLELGAYQV
LWLVAE
>Mature_645_residues
SRINMDLTFESQRTLKRILELIDLSKLTKDDLDIFLARLDKNFPALFAKLYHLYGDKYDFFYHLQQLVAHLAAGIIARSG
KLKKQDTLRLNKPDWYRDHKMLGMAAYVDLFAGDLKKLKAKIPYLKSLGINYLHLMPLYKSPKGDSDGGYAVSDYREVDP
KLGTEKDLLALSDALSAEGISLVLDFVFNHTSDEHPWAEAAKVGAEEFTDFYYFFEKKQEIDDYNQTCREIFPTVRRGSF
TYLEAQKKWVWTTFNSFQWDLNYSNPAVFNAITDEMLFLANLGCEGLRLDALAFIWKEKWTQCENLPKAHTLIQAFNLCL
QIVAPAVVFKSEAIVHPDEVAKYIGKDECQLSYNPLMMALMWESLATRETKLLTASLKKSFAISPQCSWVNYIRCHDDIG
WTFDDSLAQQLGINGFDHRRFLNNFYTGRFEGSFAQGVPFQENPATGDCRVCGSLASLTGLEKGLEQNNQRDIDFALKRI
SLLNSINMSIGGIPLIYQGDELGMLNDYSYLDDHSKKEDSRWVNRPVITEEDTKLAEKAGSAQFFVKQSLQAMINIRQQH
QVFGIAETKILETYNPHLFAYCRIHESGQKMLAICNFSEESQSVNSSITDILASNKMVDLLTATKVKKTAVLELGAYQVL
WLVAE

Specific function: Catalyzes the synthesis of alpha-glucan from sucrose. Catalyzes, in addition, sucrose hydrolysis, maltose and maltotriose synthesis by successive transfers of the glucosyl moiety of sucrose onto the released glucose, and finally turanose and trehalulose s

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=192, Percent_Identity=31.7708333333333, Blast_Score=98, Evalue=3e-20,
Organism=Escherichia coli, GI87081873, Length=588, Percent_Identity=26.0204081632653, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1790687, Length=187, Percent_Identity=31.5508021390374, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1786604, Length=137, Percent_Identity=35.036496350365, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321731, Length=185, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319776, Length=185, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322241, Length=273, Percent_Identity=25.6410256410256, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322021, Length=273, Percent_Identity=25.6410256410256, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6324416, Length=184, Percent_Identity=28.804347826087, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6322245, Length=204, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6321726, Length=185, Percent_Identity=28.1081081081081, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24586589, Length=541, Percent_Identity=21.81146025878, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583747, Length=195, Percent_Identity=34.3589743589744, Blast_Score=112, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583749, Length=195, Percent_Identity=34.3589743589744, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583745, Length=203, Percent_Identity=33.4975369458128, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24586593, Length=272, Percent_Identity=27.5735294117647, Blast_Score=101, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586591, Length=181, Percent_Identity=30.939226519337, Blast_Score=101, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586587, Length=188, Percent_Identity=31.9148936170213, Blast_Score=101, Evalue=2e-21,
Organism=Drosophila melanogaster, GI45549022, Length=203, Percent_Identity=30.5418719211823, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24586597, Length=186, Percent_Identity=29.5698924731183, Blast_Score=89, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221330053, Length=183, Percent_Identity=29.5081967213115, Blast_Score=89, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24586599, Length=185, Percent_Identity=31.3513513513514, Blast_Score=88, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281360393, Length=238, Percent_Identity=25.6302521008403, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =2.4.1.4 [H]

Molecular weight: Translated: 73693; Mature: 73562

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRINMDLTFESQRTLKRILELIDLSKLTKDDLDIFLARLDKNFPALFAKLYHLYGDKYD
CCCEEEEEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
FFYHLQQLVAHLAAGIIARSGKLKKQDTLRLNKPDWYRDHKMLGMAAYVDLFAGDLKKLK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AKIPYLKSLGINYLHLMPLYKSPKGDSDGGYAVSDYREVDPKLGTEKDLLALSDALSAEG
HHCCHHHHCCCCEEEEEECCCCCCCCCCCCEEECCHHHCCCCCCCCHHHHHHHHHHCCCH
ISLVLDFVFNHTSDEHPWAEAAKVGAEEFTDFYYFFEKKQEIDDYNQTCREIFPTVRRGS
HHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FTYLEAQKKWVWTTFNSFQWDLNYSNPAVFNAITDEMLFLANLGCEGLRLDALAFIWKEK
EEEEECCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
WTQCENLPKAHTLIQAFNLCLQIVAPAVVFKSEAIVHPDEVAKYIGKDECQLSYNPLMMA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEECCCHHHHH
LMWESLATRETKLLTASLKKSFAISPQCSWVNYIRCHDDIGWTFDDSLAQQLGINGFDHR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCHHH
RFLNNFYTGRFEGSFAQGVPFQENPATGDCRVCGSLASLTGLEKGLEQNNQRDIDFALKR
HHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ISLLNSINMSIGGIPLIYQGDELGMLNDYSYLDDHSKKEDSRWVNRPVITEEDTKLAEKA
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCHHHHHCCCCCCCCCHHHHHHHC
GSAQFFVKQSLQAMINIRQQHQVFGIAETKILETYNPHLFAYCRIHESGQKMLAICNFSE
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCCH
ESQSVNSSITDILASNKMVDLLTATKVKKTAVLELGAYQVLWLVAE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
SRINMDLTFESQRTLKRILELIDLSKLTKDDLDIFLARLDKNFPALFAKLYHLYGDKYD
CCEEEEEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH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HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12517860 [H]