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The map label for this gene is yfdE [H]

Identifier: 119855033

GI number: 119855033

Start: 154301

End: 155554

Strand: Direct

Name: yfdE [H]

Synonym: Mkms_5642

Alternate gene names: 119855033

Gene position: 154301-155554 (Clockwise)

Preceding gene: 119855032

Following gene: 119855034

Centisome position: 51.08

GC content: 62.6

Gene sequence:

>1254_bases
GTGTCCGCGAATATGGAGAGTCTGTTCGACGGTCTGACAGTCCTCGAGCTGGGGCACGTGATCGCGGCGCCTTTCGCTGC
CTCGCTGATCGGCGACTTCGGAGCACAGGTCATCAAGATCGAAGACCCCGGCTCAGGCGACATGTTGCGTAGGTCCGGTC
CGAGGAAAGACGGAGTGCCCCTCTGGTGGAAGTCCGCGGCCCGGAACAAGTCAAGCGTCGCTATCGATCTGCGTCTCCCC
GAGGGGCAAGCGCTCGTGCGCAAAATGGTCGAACGCGCAGACGTGGTGATCGAAAACTTCCGCCCGGGAACGCTTGAGCG
CTGGGGACTGGGATGGGAGGAACTGCACGCAGCGAACCCGCGGCTGATCATGTTGCGGATTTCTGGGTACGGCCAAATCG
GCCCGGAGAGCGCAAAGCCGGGATACGGACGGGTCGGCGAGGCCATGAGCGGAGCGGTACACATCACCGGGCATCCTGAC
CGGCCACCGACGCATTTCGGTTTCTCCCTCGGCGATGTCACGACAGGAATCATGGGTGCATTCGCTGTTGCCGGAGCACT
GTTCAAACGCGAAGCGATCGGGGATCGCTTCGATGGGGAATGTATCGACCTGGCTCTCTACGAATCACTGTTCCGTGGTA
TCGACTGGCAGGTCATCCTCTACGACCAGTTGAACTTTGTTGCCGAGCGTCAGGGCAATCAGTTCCAGGTCAGCCCGTCA
CCGGTGTCAGACACGTATCTCAGTTGCGATGGGGTGTGGTACACCGTGGCGACCGGCACAGTTCGGTCAGTGCAGAGCCT
GCTCGAACTGCTGGGCGGCACGACTCTGCGCAACGATCCGAAGTACGCGACTCAGGAACTGCAGATGTTGCACCGCGAGG
AGCTCGGCGAGATGGTTCGCCAGTGGTTCGCCGAAAACAACTCCGATATCGTCGAAAAGGCCTGCGCGAGCTCCGGTGTC
GTGGCTGCGCGGATCTTCACGCCGGCAGAGATGTTCTCCAGTCCCACGTTCGCGGCTCGCCAGAGCCTGGTCGAGGTCGC
CGACCAGGAATTGGGTCCGGTCCGCGTCACCGGGGTGGTACCAAGGCTGACGAACTTTCCCGGATCCGTGCGCAGCACTG
GGCCCGGTCTCGGGATCCACGGCAAAGGGGTGCTGACCGAGTGGCTCGGCATGGCCGACTCGGAGTACGAGGCGCTGGTG
TCGAGTGGCGTCGTCGGGGCGGTCGACGTTGACGGAGAGGTTCCCGGGCATTGA

Upstream 100 bases:

>100_bases
GTCAACCGCGATGCACACGTAAAAATTCTGATCGACCCATCGGCATAGCACGACCGGTATCGCGCCGTCGATTGTCACGC
CGCCCCACCAAAGGAGTTAA

Downstream 100 bases:

>100_bases
GTTCGCTGCGCGACAAGGCCTGCATCGTCGGCGTTGGTCATACGGCCTACCGTCGTGATGGCACTGAGTCGGCAACGGAC
CTTGGCCTGCAACTCGAAGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSANMESLFDGLTVLELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAIDLRLP
EGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPD
RPPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
PVSDTYLSCDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRQWFAENNSDIVEKACASSGV
VAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGKGVLTEWLGMADSEYEALV
SSGVVGAVDVDGEVPGH

Sequences:

>Translated_417_residues
MSANMESLFDGLTVLELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAIDLRLP
EGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPD
RPPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
PVSDTYLSCDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRQWFAENNSDIVEKACASSGV
VAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGKGVLTEWLGMADSEYEALV
SSGVVGAVDVDGEVPGH
>Mature_416_residues
SANMESLFDGLTVLELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAIDLRLPE
GQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDR
PPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPSP
VSDTYLSCDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRQWFAENNSDIVEKACASSGVV
AARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGKGVLTEWLGMADSEYEALVS
SGVVGAVDVDGEVPGH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=29.5, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=28.6384976525822, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=42, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=25.8215962441315, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI42794625, Length=410, Percent_Identity=26.3414634146341, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=26.6832917705736, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458393, Length=297, Percent_Identity=29.6296296296296, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=31.0756972111554, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=37.0629370629371, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=31.0734463276836, Blast_Score=188, Evalue=6e-49,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=26.241134751773, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=418, Percent_Identity=26.7942583732057, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=291, Percent_Identity=28.1786941580756, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=291, Percent_Identity=26.4604810996564, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=28.960396039604, Blast_Score=168, Evalue=6e-42,
Organism=Drosophila melanogaster, GI24585488, Length=411, Percent_Identity=26.0340632603406, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44961; Mature: 44829

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANMESLFDGLTVLELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVP
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCC
LWWKSAARNKSSVAIDLRLPEGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANP
CEEHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
RLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDRPPTHFGFSLGDVTTGIMGA
EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
FAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCEEEECCC
PVSDTYLSCDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVR
CCCCCEEECCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QWFAENNSDIVEKACASSGVVAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVV
HHHHCCCCHHHHHHHHCCCCEEEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEC
PRLTNFPGSVRSTGPGLGIHGKGVLTEWLGMADSEYEALVSSGVVGAVDVDGEVPGH
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SANMESLFDGLTVLELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVP
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCC
LWWKSAARNKSSVAIDLRLPEGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANP
CEEHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
RLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDRPPTHFGFSLGDVTTGIMGA
EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
FAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCEEEECCC
PVSDTYLSCDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVR
CCCCCEEECCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QWFAENNSDIVEKACASSGVVAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVV
HHHHCCCCHHHHHHHHCCCCEEEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEC
PRLTNFPGSVRSTGPGLGIHGKGVLTEWLGMADSEYEALVSSGVVGAVDVDGEVPGH
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]