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The map label for this gene is betI [C]

Identifier: 119776399

GI number: 119776399

Start: 3879812

End: 3880378

Strand: Direct

Name: betI [C]

Synonym: Sama_3267

Alternate gene names: 119776399

Gene position: 3879812-3880378 (Clockwise)

Preceding gene: 119776397

Following gene: 119776400

Centisome position: 90.1

GC content: 54.14

Gene sequence:

>567_bases
ATGGACAATAAGCGGGAACAAATTCTCAGAGCAGCCGAAAACATCATCGCCAACGATGGTTTACACAATCTGTCGATGCA
GAAGCTGGCCAAAGATGCCGGTGTGGCTGCTGGCACCATTTATCGCTACTTCGCCGATAAAGATGCTCTTATCGACGAAT
TGAGGCGCGATGTGCTGACTCAAATCGCCAACTTTATCCTTGAGGACGCCAGTAAAGGCAGCCTGGAAGATCGCTTTCGG
CGTATTTGGTTCAACATCATCCGGCTGGGTGAAACCTGCACTCTGGAGCGGCTCAACTTCGAGCAATACACCCATCTCCC
GGGCGCCAACAGCGAAGAGCACCGCAAGTTTGAGCGGGAAACATTCGCTCCCCTGCACTTACTCTTTGCCGAGGCAAAGG
CCCAGGGACTGATGCTGGATATGGATGACGAACTCTTGTTTGCGCTGGCCTTTGAGCCAGCCGTAGGCCTGTGCAGGCGG
ATGCGCCGCACCGGTCTGAACTTTCAACAAAGCGAGCTGGAGCAGGTATGTGACCTGTGCTGGCGCGCCATCAAGCCTCA
CCAATAA

Upstream 100 bases:

>100_bases
CATAGCAGATCCCAAAGCGTACAGGCGACCCTGCAGCGCTTGCCAAATGTTTTGTCGCGCCATAAAATGAATGAACGTTC
ATTCACTACGAGTATCAGTT

Downstream 100 bases:

>100_bases
GCGGAGCCAATAGGCAATGAAAAAGTGGATTCTGGTCATGCTGACCATAGCGCTGGTGACTCTGGGGAGTGTCATCGGCT
TTAATCTGTTTGTAAAAGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDNKREQILRAAENIIANDGLHNLSMQKLAKDAGVAAGTIYRYFADKDALIDELRRDVLTQIANFILEDASKGSLEDRFR
RIWFNIIRLGETCTLERLNFEQYTHLPGANSEEHRKFERETFAPLHLLFAEAKAQGLMLDMDDELLFALAFEPAVGLCRR
MRRTGLNFQQSELEQVCDLCWRAIKPHQ

Sequences:

>Translated_188_residues
MDNKREQILRAAENIIANDGLHNLSMQKLAKDAGVAAGTIYRYFADKDALIDELRRDVLTQIANFILEDASKGSLEDRFR
RIWFNIIRLGETCTLERLNFEQYTHLPGANSEEHRKFERETFAPLHLLFAEAKAQGLMLDMDDELLFALAFEPAVGLCRR
MRRTGLNFQQSELEQVCDLCWRAIKPHQ
>Mature_188_residues
MDNKREQILRAAENIIANDGLHNLSMQKLAKDAGVAAGTIYRYFADKDALIDELRRDVLTQIANFILEDASKGSLEDRFR
RIWFNIIRLGETCTLERLNFEQYTHLPGANSEEHRKFERETFAPLHLLFAEAKAQGLMLDMDDELLFALAFEPAVGLCRR
MRRTGLNFQQSELEQVCDLCWRAIKPHQ

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21742; Mature: 21742

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKREQILRAAENIIANDGLHNLSMQKLAKDAGVAAGTIYRYFADKDALIDELRRDVLT
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH
QIANFILEDASKGSLEDRFRRIWFNIIRLGETCTLERLNFEQYTHLPGANSEEHRKFERE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCCCCHHHHHHHHH
TFAPLHLLFAEAKAQGLMLDMDDELLFALAFEPAVGLCRRMRRTGLNFQQSELEQVCDLC
HHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
WRAIKPHQ
HHHCCCCC
>Mature Secondary Structure
MDNKREQILRAAENIIANDGLHNLSMQKLAKDAGVAAGTIYRYFADKDALIDELRRDVLT
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH
QIANFILEDASKGSLEDRFRRIWFNIIRLGETCTLERLNFEQYTHLPGANSEEHRKFERE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCCCCHHHHHHHHH
TFAPLHLLFAEAKAQGLMLDMDDELLFALAFEPAVGLCRRMRRTGLNFQQSELEQVCDLC
HHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
WRAIKPHQ
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]