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The map label for this gene is yciR [C]

Identifier: 119776397

GI number: 119776397

Start: 3875054

End: 3877642

Strand: Direct

Name: yciR [C]

Synonym: Sama_3265

Alternate gene names: 119776397

Gene position: 3875054-3877642 (Clockwise)

Preceding gene: 119776396

Following gene: 119776399

Centisome position: 89.99

GC content: 53.88

Gene sequence:

>2589_bases
ATGTTTAGGGATACTGGATTTAAGGACGAAGCCAATTCCCCGTCAGGGGGAAGCATTGAGCGGTTATTGAAGCGGGTTGA
CAGGCTCAGACGGCTTGCCGGCAAGTATAAACGTGCCGAAATCATCAGAGACGCACTCTTACAAATTACTCACATCGCCA
CCGAAGTGAATTCTCCGGAAGACTTCTATGCTGGCGTGCACCTGCATCTCAAATCCCTGATCGCCGCAGATAATTTTTTT
ATTGCCACCTATAACCACCGTACCGAGCGTCTGGAAATCCCGTTCTTTGCCGATGAAATGGATCCACATCCGGCCCAGAT
GTACCCAGATAGAGACATACACAGCATATTGATGCGGGGTATCACGGGTTATGTATTTCGCTGCGGCGAAACCATGCTGT
GCAACGAAGCCGATTTTGAACGTCTGGTCGCCGAGGAAGCCATTGAGAATTTAGGCAGTGCCAGCCACCAGTGGCTGGGA
GTGCCCATCCGTTATCAGGAGCGAACGACCGGCGTTTTAGTGGTGCAAACCTACGATCCCAACGTGAATTACGGCCTAAC
GGAAATAGAGCTGATGGAATTTATCAGCCACCATATTTCCGGGGTAATGGAGCGCCTACGTCATCAGGAGCAGCTAGAAC
AATCCATCGACCAGCGGACTAAGGAACTCAGCGAAGCCTACGACAAGCTGAAACTCGAAGTCTATGAAAGACGCCGAGCC
GAGCGACTGCAAAAATCCCTGTTTGAAATTGCTGAATTGTCGGCATCGGGGCTGGAGCAGGAAGACTTCTACAGTCGACT
GCACAACATTCTCAGCCACCTGATCCCCGCCAGTAACTGCTATATCGCGCTGCTGGACGATACCAATCAGCAGCTGCATT
TTCCCTTTTATGTTTCGCAGCTTGGCACGGAGCCCCCCAGCCGTCGTCCCCTAACCGATGGGCTGACTGAATACCTGCTC
AGCAGACGCCGCCCGCTGCTGCTGGATCAAAAAGACATCCAGGATCTGGTCAAAAAGGGGGAGATTTATGTCAACACCCC
CAATCTCAACAATACGCAAAAGATGCACCAATGGATTGGCGTTCCACTCTTTATTGGAGACGAAGTTCGCGGCGCCCTGA
CCATTTACAGCCTCAGCATGACCCAGAACTATCAGATCCGCGATTTGGAACTGTTGACCTTCGTGTCACAGCACATAGGC
ACGGCTATCGAGCGCAAACAGCATGCTGAGTTTATGAAAAAGAGCTACGAGCGGCTCGAATCCAAAGTCGCTGAACGCAC
CCGCGAGCTGGAGCTGGAAATTCAGCGCCGCCGGGAAGTGGAACAAAAGCTTATTCACGACGCCAAACACGATGCGCTGA
CAGGCCTGCCCAACCGCAGCATGTTCACCGAACGCCTCGGTCAGGCAGTGCGGCATGTCAGACGCCATGGCCGCGACCAA
TTCGCGCTGCTCTTCATCGACCTGGACAGATTCAAGCAAATCAACGATACCCTGGGGCACTTGGAAGGCGATCGTTTTTT
GATAGAAACGGCCCGCCGCCTGTCCCATTGCATTCGCGAAAACGACACCCTTGGCAGATTGGGCGGAGATGAATTTGTCG
TGCTGCTCGACCAAATCAATACCCCCAAAGACGCCGAAGAAGTCGCAGAGCGCATCCTGTCTCAGCTATCAGAGCCTTTC
CAATTGGGTGATGCCCTATTCCAGTCCGGCGCCAGTATTGGTATTGCGATCAGCGGACGCAGTCAGCAGGATACGCCCGA
GTCCATGCTGAGAGATGCTGACGCCGCCATGTATCAGGCCAAGTCCCGGGGCAAGGGATGCTATGTGGTTTACGACAGCA
AACGCCGCGAGGAACATCAGGCCGAGCTACATGATGAGGCATTACTGCGGGACGCATTGGCCCGGGACGAGTTGTATCTC
AAAATCCTGCCGGTGGAGTCACTCTCCACGGGGGAACCTCTGGCCTACCGTTTAAGCCTTGGCTGGCGTCCCTCAAAAGG
AGGCGAGCTGGCGGAAGACACTATTCTATCTATTGCCGAACGCTCCAATCTTATCCTCGAGCTGGACCGCTGTTTGCTGA
GACACCTCAAGCGTCCACTTCCCCTCGAGCTCAACGATGCCGAACTGCATTTGTGTTTATCCAGCGCCCATCTCAAGCAC
AAACATGCCCTGAGAGGCCTGAAAAACATGGTCAGAGAGCTGAATCTGGATCCCGCAAAGCTGTGGCTATTTTTCGATGA
ACGAGCCTTGGTGCAAGACACTCAAGGGCACATTGCAGGCTTCGAGGCACTGGGAAAACTGGGGGTGAGTTTCGGGCTAT
CGGGCTATGGCAATGGCTACAGCTCACTGAAATCCCTCACTCTCATGCCCATCAAGGCGCTACGGTTGGCGCCCACCACA
GACAGACTTGGCTCGGAAAAAGTGCGCTTACTTACCGCCTCGGCCATGGCAGCGTCTTCATTGGGATTAACCGTCATCGC
CTCAGGCACCGAATGTAGCCTCACCCGCCAGAGTTTGGTGCAGGCAGGTATCGATCACATTCAACAATTGCAGCCACTAC
ATCAGGCGCAGAGCAGCGTCTGCGCCTGA

Upstream 100 bases:

>100_bases
AAATCCTCCTAAGAATTCCCTTTGAGCCTATTCCATTCGGGAGTATGCTGTTCTTTTAACGTCTCTGTTACCTATTAACT
TTACAACTGCGACGAACGAT

Downstream 100 bases:

>100_bases
TATCCTGAGTCATTATTTTTTAAACATGGCCCTGATATTGGCGATATTGGCTTTGCCCGTTTCCTGCCGTTGTTGCTCTG
TTTGGGGCTGCTTGCGACTC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 862; Mature: 862

Protein sequence:

>862_residues
MFRDTGFKDEANSPSGGSIERLLKRVDRLRRLAGKYKRAEIIRDALLQITHIATEVNSPEDFYAGVHLHLKSLIAADNFF
IATYNHRTERLEIPFFADEMDPHPAQMYPDRDIHSILMRGITGYVFRCGETMLCNEADFERLVAEEAIENLGSASHQWLG
VPIRYQERTTGVLVVQTYDPNVNYGLTEIELMEFISHHISGVMERLRHQEQLEQSIDQRTKELSEAYDKLKLEVYERRRA
ERLQKSLFEIAELSASGLEQEDFYSRLHNILSHLIPASNCYIALLDDTNQQLHFPFYVSQLGTEPPSRRPLTDGLTEYLL
SRRRPLLLDQKDIQDLVKKGEIYVNTPNLNNTQKMHQWIGVPLFIGDEVRGALTIYSLSMTQNYQIRDLELLTFVSQHIG
TAIERKQHAEFMKKSYERLESKVAERTRELELEIQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQ
FALLFIDLDRFKQINDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQINTPKDAEEVAERILSQLSEPF
QLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQAKSRGKGCYVVYDSKRREEHQAELHDEALLRDALARDELYL
KILPVESLSTGEPLAYRLSLGWRPSKGGELAEDTILSIAERSNLILELDRCLLRHLKRPLPLELNDAELHLCLSSAHLKH
KHALRGLKNMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGYSSLKSLTLMPIKALRLAPTT
DRLGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLVQAGIDHIQQLQPLHQAQSSVCA

Sequences:

>Translated_862_residues
MFRDTGFKDEANSPSGGSIERLLKRVDRLRRLAGKYKRAEIIRDALLQITHIATEVNSPEDFYAGVHLHLKSLIAADNFF
IATYNHRTERLEIPFFADEMDPHPAQMYPDRDIHSILMRGITGYVFRCGETMLCNEADFERLVAEEAIENLGSASHQWLG
VPIRYQERTTGVLVVQTYDPNVNYGLTEIELMEFISHHISGVMERLRHQEQLEQSIDQRTKELSEAYDKLKLEVYERRRA
ERLQKSLFEIAELSASGLEQEDFYSRLHNILSHLIPASNCYIALLDDTNQQLHFPFYVSQLGTEPPSRRPLTDGLTEYLL
SRRRPLLLDQKDIQDLVKKGEIYVNTPNLNNTQKMHQWIGVPLFIGDEVRGALTIYSLSMTQNYQIRDLELLTFVSQHIG
TAIERKQHAEFMKKSYERLESKVAERTRELELEIQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQ
FALLFIDLDRFKQINDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQINTPKDAEEVAERILSQLSEPF
QLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQAKSRGKGCYVVYDSKRREEHQAELHDEALLRDALARDELYL
KILPVESLSTGEPLAYRLSLGWRPSKGGELAEDTILSIAERSNLILELDRCLLRHLKRPLPLELNDAELHLCLSSAHLKH
KHALRGLKNMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGYSSLKSLTLMPIKALRLAPTT
DRLGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLVQAGIDHIQQLQPLHQAQSSVCA
>Mature_862_residues
MFRDTGFKDEANSPSGGSIERLLKRVDRLRRLAGKYKRAEIIRDALLQITHIATEVNSPEDFYAGVHLHLKSLIAADNFF
IATYNHRTERLEIPFFADEMDPHPAQMYPDRDIHSILMRGITGYVFRCGETMLCNEADFERLVAEEAIENLGSASHQWLG
VPIRYQERTTGVLVVQTYDPNVNYGLTEIELMEFISHHISGVMERLRHQEQLEQSIDQRTKELSEAYDKLKLEVYERRRA
ERLQKSLFEIAELSASGLEQEDFYSRLHNILSHLIPASNCYIALLDDTNQQLHFPFYVSQLGTEPPSRRPLTDGLTEYLL
SRRRPLLLDQKDIQDLVKKGEIYVNTPNLNNTQKMHQWIGVPLFIGDEVRGALTIYSLSMTQNYQIRDLELLTFVSQHIG
TAIERKQHAEFMKKSYERLESKVAERTRELELEIQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQ
FALLFIDLDRFKQINDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQINTPKDAEEVAERILSQLSEPF
QLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQAKSRGKGCYVVYDSKRREEHQAELHDEALLRDALARDELYL
KILPVESLSTGEPLAYRLSLGWRPSKGGELAEDTILSIAERSNLILELDRCLLRHLKRPLPLELNDAELHLCLSSAHLKH
KHALRGLKNMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGYSSLKSLTLMPIKALRLAPTT
DRLGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLVQAGIDHIQQLQPLHQAQSSVCA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=29.9765807962529, Blast_Score=172, Evalue=6e-44,
Organism=Escherichia coli, GI1788381, Length=212, Percent_Identity=37.7358490566038, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87081977, Length=228, Percent_Identity=35.0877192982456, Blast_Score=111, Evalue=3e-25,
Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=23.1503579952267, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI226510982, Length=436, Percent_Identity=22.4770642201835, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=34.6153846153846, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=35.2601156069364, Blast_Score=94, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=196, Percent_Identity=32.6530612244898, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=34.9112426035503, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=35.7615894039735, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=32.0855614973262, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=32.5, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=30.0613496932515, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 98036; Mature: 98036

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRDTGFKDEANSPSGGSIERLLKRVDRLRRLAGKYKRAEIIRDALLQITHIATEVNSPE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DFYAGVHLHLKSLIAADNFFIATYNHRTERLEIPFFADEMDPHPAQMYPDRDIHSILMRG
HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCEECCCCCCCCCCCCCCCHHHHHHHHH
ITGYVFRCGETMLCNEADFERLVAEEAIENLGSASHQWLGVPIRYQERTTGVLVVQTYDP
HHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEECCCEEEECCCCCEEEEEEECC
NVNYGLTEIELMEFISHHISGVMERLRHQEQLEQSIDQRTKELSEAYDKLKLEVYERRRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLQKSLFEIAELSASGLEQEDFYSRLHNILSHLIPASNCYIALLDDTNQQLHFPFYVSQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCHHHH
LGTEPPSRRPLTDGLTEYLLSRRRPLLLDQKDIQDLVKKGEIYVNTPNLNNTQKMHQWIG
HCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC
VPLFIGDEVRGALTIYSLSMTQNYQIRDLELLTFVSQHIGTAIERKQHAEFMKKSYERLE
CCEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVAERTRELELEIQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
FALLFIDLDRFKQINDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQIN
EEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
TPKDAEEVAERILSQLSEPFQLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQA
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
KSRGKGCYVVYDSKRREEHQAELHDEALLRDALARDELYLKILPVESLSTGEPLAYRLSL
HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEE
GWRPSKGGELAEDTILSIAERSNLILELDRCLLRHLKRPLPLELNDAELHLCLSSAHLKH
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHHHHHH
KHALRGLKNMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGY
HHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCH
SSLKSLTLMPIKALRLAPTTDRLGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLV
HHHHHHHHHHHHHHEECCCHHHCCCCHHHEEEHHHHHHHCCCEEEEECCCCCHHHHHHHH
QAGIDHIQQLQPLHQAQSSVCA
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFRDTGFKDEANSPSGGSIERLLKRVDRLRRLAGKYKRAEIIRDALLQITHIATEVNSPE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DFYAGVHLHLKSLIAADNFFIATYNHRTERLEIPFFADEMDPHPAQMYPDRDIHSILMRG
HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCEECCCCCCCCCCCCCCCHHHHHHHHH
ITGYVFRCGETMLCNEADFERLVAEEAIENLGSASHQWLGVPIRYQERTTGVLVVQTYDP
HHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEECCCEEEECCCCCEEEEEEECC
NVNYGLTEIELMEFISHHISGVMERLRHQEQLEQSIDQRTKELSEAYDKLKLEVYERRRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLQKSLFEIAELSASGLEQEDFYSRLHNILSHLIPASNCYIALLDDTNQQLHFPFYVSQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCHHHH
LGTEPPSRRPLTDGLTEYLLSRRRPLLLDQKDIQDLVKKGEIYVNTPNLNNTQKMHQWIG
HCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC
VPLFIGDEVRGALTIYSLSMTQNYQIRDLELLTFVSQHIGTAIERKQHAEFMKKSYERLE
CCEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVAERTRELELEIQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
FALLFIDLDRFKQINDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQIN
EEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
TPKDAEEVAERILSQLSEPFQLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQA
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
KSRGKGCYVVYDSKRREEHQAELHDEALLRDALARDELYLKILPVESLSTGEPLAYRLSL
HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEE
GWRPSKGGELAEDTILSIAERSNLILELDRCLLRHLKRPLPLELNDAELHLCLSSAHLKH
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHHHHHH
KHALRGLKNMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGY
HHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCH
SSLKSLTLMPIKALRLAPTTDRLGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLV
HHHHHHHHHHHHHHEECCCHHHCCCCHHHEEEHHHHHHHCCCEEEEECCCCCHHHHHHHH
QAGIDHIQQLQPLHQAQSSVCA
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]