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The map label for this gene is ytfE [C]

Identifier: 119776368

GI number: 119776368

Start: 3829918

End: 3830622

Strand: Direct

Name: ytfE [C]

Synonym: Sama_3236

Alternate gene names: 119776368

Gene position: 3829918-3830622 (Clockwise)

Preceding gene: 119776367

Following gene: 119776373

Centisome position: 88.94

GC content: 54.18

Gene sequence:

>705_bases
ATGTATTCACAGGCTTTACTCGAATGTTCGGTTGGCGAATTGGTAGCGCAGGACTACAGGCGTGCCCATGTGTTTTCCCG
CTTTGGCATCGATTTTTGTTGTGGCGGCGGCCGTCCCCTCAAAGAAGCCTGCGACAGGGCTGACGCTGACCCATCCGAGG
TGATGCAGGCGCTGTTACATAGCGCTGCCACTGGCGCTGCTGAAGACCAGCTGGACAAGCTACCTCTGGCGGAACTCATT
GATTATATTGAGGCTACCCATCACACCTATGTGAGGGAAAAGGCCCCCTTGCTGCTGGAATATGCCGCAAAAATGGTTCG
TGCCCATGGCGAAAACTACAGCGAGATTAAACCGCTGGCAGGTTGGATAAGGGCCTTGGTGGACGACCTGATGCCCCATC
TGCTCAAAGAAGAGCAAATCCTCTTCCCCGCTATTCGCGCCCTCGCGGCCGGTGAACAGGTCAATGGCTGCTTCGGTCAT
ATTGGCAATCCGGTCAGGGCCATGGAGTATGAGCATGAAGACGCGGGCAACGTGCTTAAAAAACTGAGAGAGTTAACCGG
GGATTTCACACCGCCACCCCATGCCTGTACCACCTGGCGCATCTGCTACCACACACTGGCCGAGTTTGAAGCGGATCTGC
ATCGCCATATTCATTTGGAAAACAATGTGTTGTTTCCAAAAACACTGAAGCTCACCCAGGGGTGA

Upstream 100 bases:

>100_bases
CCCAATGCTGTGATTAACCCAGCAAAATACTCAAGTTTATATTGCCGCCGCGAGCGCGCATTTTTAACATGCATACAGAT
TGCAGCTAAAGGAGCGCATT

Downstream 100 bases:

>100_bases
GCTTCACAAGCTAAACAGGATTATCAGGGCGCCACATGCCAGGGGCCGCCCAAGGTAACGGCTGATTGCTTGTGGGCAAG
CAGCTGTTCAACCAGTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: RCMNS [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MYSQALLECSVGELVAQDYRRAHVFSRFGIDFCCGGGRPLKEACDRADADPSEVMQALLHSAATGAAEDQLDKLPLAELI
DYIEATHHTYVREKAPLLLEYAAKMVRAHGENYSEIKPLAGWIRALVDDLMPHLLKEEQILFPAIRALAAGEQVNGCFGH
IGNPVRAMEYEHEDAGNVLKKLRELTGDFTPPPHACTTWRICYHTLAEFEADLHRHIHLENNVLFPKTLKLTQG

Sequences:

>Translated_234_residues
MYSQALLECSVGELVAQDYRRAHVFSRFGIDFCCGGGRPLKEACDRADADPSEVMQALLHSAATGAAEDQLDKLPLAELI
DYIEATHHTYVREKAPLLLEYAAKMVRAHGENYSEIKPLAGWIRALVDDLMPHLLKEEQILFPAIRALAAGEQVNGCFGH
IGNPVRAMEYEHEDAGNVLKKLRELTGDFTPPPHACTTWRICYHTLAEFEADLHRHIHLENNVLFPKTLKLTQG
>Mature_234_residues
MYSQALLECSVGELVAQDYRRAHVFSRFGIDFCCGGGRPLKEACDRADADPSEVMQALLHSAATGAAEDQLDKLPLAELI
DYIEATHHTYVREKAPLLLEYAAKMVRAHGENYSEIKPLAGWIRALVDDLMPHLLKEEQILFPAIRALAAGEQVNGCFGH
IGNPVRAMEYEHEDAGNVLKKLRELTGDFTPPPHACTTWRICYHTLAEFEADLHRHIHLENNVLFPKTLKLTQG

Specific function: Involved in anaerobic NO protection [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=219, Percent_Identity=39.7260273972603, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 26184; Mature: 26184

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSQALLECSVGELVAQDYRRAHVFSRFGIDFCCGGGRPLKEACDRADADPSEVMQALLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHCCCCCCHHHHHHHHHH
SAATGAAEDQLDKLPLAELIDYIEATHHTYVREKAPLLLEYAAKMVRAHGENYSEIKPLA
HHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH
GWIRALVDDLMPHLLKEEQILFPAIRALAAGEQVNGCFGHIGNPVRAMEYEHEDAGNVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHH
KLRELTGDFTPPPHACTTWRICYHTLAEFEADLHRHIHLENNVLFPKTLKLTQG
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHCCCCC
>Mature Secondary Structure
MYSQALLECSVGELVAQDYRRAHVFSRFGIDFCCGGGRPLKEACDRADADPSEVMQALLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHCCCCCCHHHHHHHHHH
SAATGAAEDQLDKLPLAELIDYIEATHHTYVREKAPLLLEYAAKMVRAHGENYSEIKPLA
HHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH
GWIRALVDDLMPHLLKEEQILFPAIRALAAGEQVNGCFGHIGNPVRAMEYEHEDAGNVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHH
KLRELTGDFTPPPHACTTWRICYHTLAEFEADLHRHIHLENNVLFPKTLKLTQG
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA