Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119776367
Identifier: 119776367
GI number: 119776367
Start: 3829138
End: 3829524
Strand: Direct
Name: 119776367
Synonym: Sama_3235
Alternate gene names: NA
Gene position: 3829138-3829524 (Clockwise)
Preceding gene: 119776366
Following gene: 119776368
Centisome position: 88.92
GC content: 51.94
Gene sequence:
>387_bases ATGAAAGCTCGCATATTATTTATACCCGCATTACTGCTGGGATTAACCGCCACAGCAGGCGCCACCGAATACCGCTTTAT CGCCGTCGACAACAGCCCCGAAACTCAGATGTGTGTCGCAGCAGGCAGCAATAAGGTGACCAAGCTGCGGATGCAGTTCA ACGAAGCCAGCGGCAGTCCCCGCTACCATGCCAACAGCATTCGCTGCAACGACAGGAGCATTGCCCAGTTCGCTCATGCC TATGGTGCTGACAAGGCCTATGACTATTTGGCCTCTCACTCTCGGGATAAAAACCGGGTGATAGAAAGCGTGACAATTAA AGATCTGTCAGCTGCCGCAAGCCAAAACAGTGACGAGATTGTTTATATCCGGGTGTCTTCACGCTAA
Upstream 100 bases:
>100_bases TGCCGTGGAGCATGCCTTTATAGATGAGCCCCACAGGTAAGTCCTACAGCGCCCACCACAGGGTCAGGAACTTGATAGGT CATCATTGAAGGAACAAACT
Downstream 100 bases:
>100_bases GCCGGTTGTAACAATCGACAAGGTCTCCACCGGGTGAACCCCTTGTACGGCCGCGATCTGGCCGACAGGGCCCCGGCGAA CCTGATGGGTTATCCGCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 128
Protein sequence:
>128_residues MKARILFIPALLLGLTATAGATEYRFIAVDNSPETQMCVAAGSNKVTKLRMQFNEASGSPRYHANSIRCNDRSIAQFAHA YGADKAYDYLASHSRDKNRVIESVTIKDLSAAASQNSDEIVYIRVSSR
Sequences:
>Translated_128_residues MKARILFIPALLLGLTATAGATEYRFIAVDNSPETQMCVAAGSNKVTKLRMQFNEASGSPRYHANSIRCNDRSIAQFAHA YGADKAYDYLASHSRDKNRVIESVTIKDLSAAASQNSDEIVYIRVSSR >Mature_128_residues MKARILFIPALLLGLTATAGATEYRFIAVDNSPETQMCVAAGSNKVTKLRMQFNEASGSPRYHANSIRCNDRSIAQFAHA YGADKAYDYLASHSRDKNRVIESVTIKDLSAAASQNSDEIVYIRVSSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14061; Mature: 14061
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKARILFIPALLLGLTATAGATEYRFIAVDNSPETQMCVAAGSNKVTKLRMQFNEASGSP CCCEEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEEEECCCCCC RYHANSIRCNDRSIAQFAHAYGADKAYDYLASHSRDKNRVIESVTIKDLSAAASQNSDEI CCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCE VYIRVSSR EEEEECCC >Mature Secondary Structure MKARILFIPALLLGLTATAGATEYRFIAVDNSPETQMCVAAGSNKVTKLRMQFNEASGSP CCCEEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEEEECCCCCC RYHANSIRCNDRSIAQFAHAYGADKAYDYLASHSRDKNRVIESVTIKDLSAAASQNSDEI CCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCE VYIRVSSR EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA