| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776101
Identifier: 119776101
GI number: 119776101
Start: 3535165
End: 3535839
Strand: Reverse
Name: 119776101
Synonym: Sama_2969
Alternate gene names: NA
Gene position: 3535839-3535165 (Counterclockwise)
Preceding gene: 119776103
Following gene: 119776098
Centisome position: 82.11
GC content: 53.93
Gene sequence:
>675_bases GTGACGGAACTGCATCATCCCCTGAATGACTTTATTGAATACCCACCCGAAGAAATGCGTCGCCGCGCAGAGGCCAATCT TATCGAGCTTCGCCGACGTCACTCCATTCGCAAGTTTTCAGACAAGCCGGTGGCCAGAGAAATCATTGAGCAATGCATAT TGGCAGCAGCTTCGGCGCCAAGCGGTGCCAATCATCAGCCCTGGCATTTTGTGGCAATTTCCAGTCCCGATGTGAAGGCA GCAATTCGTTGTGAAGCGGAGGCGCTGGAGCAAAGTTTTTATCAGGGACGGGCAGGGGAAGAGTGGCTGGACGCTTTAAA GCCCCTGGGCACCAACGCGAATAAGGCCTATTTGGAACGAGCCCCCTGGTTGATTGCCGTGTTCAGCCAAAAGCGCGGCG GTGTGGATGAAGGCGATAATAAGACAAACTACTATGTGCATGAATCCGTTGGTATTGCTACCGGCTTTTTGATTCAGGCA CTGCACCATGCGGGCCTTGGCACCCTGACCCATACCCCAAAACCCATGAGCTTTTTGAGCAAAATTTGCGGCCGTGACAA CGATGTGGACCGGCCCTACATGCTGATTGTGGCCGGGTATCCCGACCAGGATGCCACTGTCCCCGACCATGCCCTGAAAA AGAAATCCCTGGAGCAGGTGGCTTCGTTTCTCTAG
Upstream 100 bases:
>100_bases ATAATTTTACCTACACCTGTTCGGTAAAGGTTTTGCTGTGACTGCTCATGCTTCCTGATAAGGTGGATGCCTGAAGAATA TGGCAAAAGGAGTCTGACCC
Downstream 100 bases:
>100_bases TTGGCTGTTTTTCAATAACTATTGGTGCAGCCGGTTGTTGTACTCTTGGTGCCGGCTTTGGCGGCCTTAACCCATGCAGA CATGGGTTAAGGTGGGCGGG
Product: nitroreductase
Products: NA
Alternate protein names: Oxidoreductase; Nitroreductase Family Protein; NAD(P)H-Flavin Oxidoreductase; NADH Oxidase
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTELHHPLNDFIEYPPEEMRRRAEANLIELRRRHSIRKFSDKPVAREIIEQCILAAASAPSGANHQPWHFVAISSPDVKA AIRCEAEALEQSFYQGRAGEEWLDALKPLGTNANKAYLERAPWLIAVFSQKRGGVDEGDNKTNYYVHESVGIATGFLIQA LHHAGLGTLTHTPKPMSFLSKICGRDNDVDRPYMLIVAGYPDQDATVPDHALKKKSLEQVASFL
Sequences:
>Translated_224_residues MTELHHPLNDFIEYPPEEMRRRAEANLIELRRRHSIRKFSDKPVAREIIEQCILAAASAPSGANHQPWHFVAISSPDVKA AIRCEAEALEQSFYQGRAGEEWLDALKPLGTNANKAYLERAPWLIAVFSQKRGGVDEGDNKTNYYVHESVGIATGFLIQA LHHAGLGTLTHTPKPMSFLSKICGRDNDVDRPYMLIVAGYPDQDATVPDHALKKKSLEQVASFL >Mature_223_residues TELHHPLNDFIEYPPEEMRRRAEANLIELRRRHSIRKFSDKPVAREIIEQCILAAASAPSGANHQPWHFVAISSPDVKAA IRCEAEALEQSFYQGRAGEEWLDALKPLGTNANKAYLERAPWLIAVFSQKRGGVDEGDNKTNYYVHESVGIATGFLIQAL HHAGLGTLTHTPKPMSFLSKICGRDNDVDRPYMLIVAGYPDQDATVPDHALKKKSLEQVASFL
Specific function: Unknown
COG id: COG0778
COG function: function code C; Nitroreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42794271, Length=208, Percent_Identity=42.3076923076923, Blast_Score=146, Evalue=2e-35, Organism=Homo sapiens, GI257743489, Length=152, Percent_Identity=42.1052631578947, Blast_Score=114, Evalue=5e-26, Organism=Homo sapiens, GI257743486, Length=158, Percent_Identity=41.1392405063291, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71980980, Length=197, Percent_Identity=30.4568527918782, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI281366032, Length=206, Percent_Identity=37.8640776699029, Blast_Score=121, Evalue=3e-28, Organism=Drosophila melanogaster, GI24662475, Length=190, Percent_Identity=38.9473684210526, Blast_Score=120, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25056; Mature: 24924
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELHHPLNDFIEYPPEEMRRRAEANLIELRRRHSIRKFSDKPVAREIIEQCILAAASAP CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC SGANHQPWHFVAISSPDVKAAIRCEAEALEQSFYQGRAGEEWLDALKPLGTNANKAYLER CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH APWLIAVFSQKRGGVDEGDNKTNYYVHESVGIATGFLIQALHHAGLGTLTHTPKPMSFLS CCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH KICGRDNDVDRPYMLIVAGYPDQDATVPDHALKKKSLEQVASFL HHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC >Mature Secondary Structure TELHHPLNDFIEYPPEEMRRRAEANLIELRRRHSIRKFSDKPVAREIIEQCILAAASAP CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC SGANHQPWHFVAISSPDVKAAIRCEAEALEQSFYQGRAGEEWLDALKPLGTNANKAYLER CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH APWLIAVFSQKRGGVDEGDNKTNYYVHESVGIATGFLIQALHHAGLGTLTHTPKPMSFLS CCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH KICGRDNDVDRPYMLIVAGYPDQDATVPDHALKKKSLEQVASFL HHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA