| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is mrcB [H]
Identifier: 119776103
GI number: 119776103
Start: 3537747
End: 3540086
Strand: Reverse
Name: mrcB [H]
Synonym: Sama_2971
Alternate gene names: 119776103
Gene position: 3540086-3537747 (Counterclockwise)
Preceding gene: 119776104
Following gene: 119776101
Centisome position: 82.21
GC content: 58.46
Gene sequence:
>2340_bases ATGACTTCAGATAAACGGAATTCAGGCAAAAGGGCGCCCGCCAAGGGCGCATCGGCAAAGTCCAGAACGTCAGCCAAAGC CCGTAATAAGCCCGGGATCCTGCGGCGCATATGGTCATTCCTGTGGAAGCTGACCCTGGTGGTGTTGGTGCTGTGCGCCG CCTATGGCATTTACCTCGACCAGCAAATTGCCCGCAAATTTGAAGGCCAGAAGTGGCACCTGCCGGCGCAGATTTACAGT CGTTCCATGGCGCTCTATCCGGGGGCGGCCGTGAGCCATCATCAACTGCTGGCCGAACTCCAACTGTTGGGATACCGCAA GGTAGCCAATCCCCGTCAGGTCGGTGAGTTTTCTGCCTCCGCTACCCGCATCGATTTGTGGCGCCGTCCCTTCCTGCATC CGCTGGGCAGCCAGGATGCGGCACGTGTGATGATTGCATTTGATTCGCAAGGGGTTTCTACGGTGTCTCGCCACGGCGAC AAGCGTGAGCTGGCGGTGTTTCACCTCGAACCCATGCTGCTGGACCGACTGATTGCCGACGATGGCGAAGACAGGCTGTT TGTTCCGCGCAGGGAAGTGCCCGATACCATGGTTGAAGCGCTCCTCCTGGTGGAAGACCGCAGCTTTTACGAGCACCACG GGGTGAATCCCTTTGCCATTTTGCGCGCGGCTTTTGTCAATATCAGCGCCGGGCGCACAGTGCAGGGTGGCTCTACCCTG ACCCAGCAGCTGGCGAAAAACTTTTTCCTCTCCAGCGAGCGCTCCCTTATCCGTAAGGTGCGCGAAGCCTTGATGGCCAT CATCATCGACTTCCGCTACAGCAAGGATGAGATCCTCGAGGCCTACCTCAACGAAGTTTACATGGGGCAGGACAAGTCCC GTGGTGTGCACGGTATGGGGCTGGCATCGCAGTTTTACTTTGGTCGTCCGCTCACCGAACTCACCACTGCCCAGCAGGCT TTTTTGATTGCGGTGATCAAGGGGCCTTCCTACTACAATCCCTGGCGTTATCCGGCGCGGGCACAGGAGCGACGTGATCT GGTGCTCAGGCTCTTGATGGAGTCGGGCAAAATCAGTGTCAACGACTTCCAGATTGCCGCCGAATCGCCCCTGGGTTTAA GACCCGAAGGACGCCCTGTGCATCAGCGTATGCCGGCCTTTTACACCCAGGTGAAAAAAGAGCTGGCGCTGCGCTGGGGG GACAGCCTGCTCAATGAGTCGGGCATCAAGGTGTACACCACTCTCGACCCCATCGCCCAGGAAGCCGCCGAGAAGGCCGT GAAAGAGGTGATGGGCCGTATCGGCAAAGACACCAAGGAACTGCAGGCTGCCATGGTGGTTACCGACAAGTTTGGTGGCG GCATTGCGGCCATGGTGGGGGACAGAAACCCCAGCTTTGAAGGTTACAACCGGGTCAGTGAGATGCGTCGCCCCATAGGT TCGCTGGTCAAGCCTTTCGTGTATATGACGGCCCTCGAAGACAGCAACTACAACCTGATGACGTCGTTGAAAGACGAGCC CCTGACCGTGACCAACAAGCATGGCCAGAGCTGGTCACCCATGAACTACGACAAGACGTTCAGTGGTCAGGTGCCTTTGA TGCGCGCCATGTACAAATCACTCAACGTCCCCACTGTGAATCTGGGGCTGGCCGTGGGCGTGGATGCGGTGATTAACACC CTCGACGATGCCGGCTGGCGCGGTGAGGCCATTAATCCCTATCCGTCGATGCTGCTGGGCGCCGTGGATGGCTCGCCACT GATGGTGGCACAGATTTACCAGACACTCGCAGACAATGGCCGTTATCGCCAGCTATCCACCGTCACCGATGTGTTGGATA TGAATAACGAAGCCATTCTGGCCAGTCGTTTGCCCTCTGAGCAATCGCTTGAGCCAGCGGCGGCCTATCTGTCCCAGTAC ATCATGACCCGTGTCGTGTCGGAAGGTACAGGTGCGCGCCTTGGCCGCGCCTTCCCCAACGTGACCCTGGCGGGCAAGAC CGGCACCAGTAACGATAGCCGTGACTCCTGGTTTGCCGGTTTTGATGAGCGGAACGTGGCTGCTGTATGGGTGGGCCGCG ATGATAACGGCAAGACCAAACTGGTGGGTGCCAGCGGCGCCATGGCGATTTATCAGGCCTTCCTGGAGGCACGCCCGCCG GTGGCGCTGAGGATGACGCCACCTGACGATGTGGTGCAGGGCTATTTTGATTTGAATGGCAACGCGCTGGAAAAAGGCTG CCCGGGTGCGGTGGCACTGCCTGCAAAAGCAGGCAGCTGGAGGCCGGCACAAAACTGTGGCAAGCCGCTATCCTGGTGGC AAAAAATTATCGGTGGTTAA
Upstream 100 bases:
>100_bases CCGTTATCCCAAGCATTTGTGGCCGGACGACCCGGCAAACACCTTACCGACCAAATTTACCAAGAAAAAGACCTTGGGCC AGGCCTGAGGCAGAGAAAGT
Downstream 100 bases:
>100_bases CACAGATTCAGCGAGTATCACCCTGATAAAAAGCCCGGCATCGCCGGGCTTTTTGTTTAAGGTGCGCCCCGGGCTTAGGC GAGTTTAACCCTGTTCCCGC
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MTSDKRNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLDQQIARKFEGQKWHLPAQIYS RSMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSASATRIDLWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGD KRELAVFHLEPMLLDRLIADDGEDRLFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTL TQQLAKNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMGLASQFYFGRPLTELTTAQQA FLIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISVNDFQIAAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWG DSLLNESGIKVYTTLDPIAQEAAEKAVKEVMGRIGKDTKELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIG SLVKPFVYMTALEDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKSLNVPTVNLGLAVGVDAVINT LDDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNGRYRQLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQY IMTRVVSEGTGARLGRAFPNVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPP VALRMTPPDDVVQGYFDLNGNALEKGCPGAVALPAKAGSWRPAQNCGKPLSWWQKIIGG
Sequences:
>Translated_779_residues MTSDKRNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLDQQIARKFEGQKWHLPAQIYS RSMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSASATRIDLWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGD KRELAVFHLEPMLLDRLIADDGEDRLFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTL TQQLAKNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMGLASQFYFGRPLTELTTAQQA FLIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISVNDFQIAAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWG DSLLNESGIKVYTTLDPIAQEAAEKAVKEVMGRIGKDTKELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIG SLVKPFVYMTALEDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKSLNVPTVNLGLAVGVDAVINT LDDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNGRYRQLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQY IMTRVVSEGTGARLGRAFPNVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPP VALRMTPPDDVVQGYFDLNGNALEKGCPGAVALPAKAGSWRPAQNCGKPLSWWQKIIGG >Mature_778_residues TSDKRNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLDQQIARKFEGQKWHLPAQIYSR SMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSASATRIDLWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGDK RELAVFHLEPMLLDRLIADDGEDRLFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTLT QQLAKNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMGLASQFYFGRPLTELTTAQQAF LIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISVNDFQIAAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWGD SLLNESGIKVYTTLDPIAQEAAEKAVKEVMGRIGKDTKELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIGS LVKPFVYMTALEDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKSLNVPTVNLGLAVGVDAVINTL DDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNGRYRQLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQYI MTRVVSEGTGARLGRAFPNVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPPV ALRMTPPDDVVQGYFDLNGNALEKGCPGAVALPAKAGSWRPAQNCGKPLSWWQKIIGG
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=722, Percent_Identity=44.5983379501385, Blast_Score=603, Evalue=1e-173, Organism=Escherichia coli, GI1788867, Length=543, Percent_Identity=29.8342541436464, Blast_Score=186, Evalue=6e-48, Organism=Escherichia coli, GI87082258, Length=254, Percent_Identity=39.7637795275591, Blast_Score=183, Evalue=4e-47, Organism=Escherichia coli, GI1789601, Length=170, Percent_Identity=32.9411764705882, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 86165; Mature: 86034
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSDKRNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLD CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQIARKFEGQKWHLPAQIYSRSMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSAS HHHHHHHCCCEEECCHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC ATRIDLWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGDKRELAVFHLEPMLLDRLIAD HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCEEEEEECCHHHHHHHHHC DGEDRLFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTL CCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCEECCCHHH TQQLAKNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC LASQFYFGRPLTELTTAQQAFLIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISV CHHHHHCCCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE NDFQIAAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWGDSLLNESGIKVYTTLDPIAQ EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH EAAEKAVKEVMGRIGKDTKELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIG HHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH SLVKPFVYMTALEDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKS HHHHHHHEEEEECCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH LNVPTVNLGLAVGVDAVINTLDDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNG CCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHCCC RYRQLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQYIMTRVVSEGTGARLGRAFPN CEEEHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC VTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPP EEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCC VALRMTPPDDVVQGYFDLNGNALEKGCPGAVALPAKAGSWRPAQNCGKPLSWWQKIIGG EEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCHHHHHHHHHCC >Mature Secondary Structure TSDKRNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLD CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQIARKFEGQKWHLPAQIYSRSMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSAS HHHHHHHCCCEEECCHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC ATRIDLWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGDKRELAVFHLEPMLLDRLIAD HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCEEEEEECCHHHHHHHHHC DGEDRLFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTL CCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCEECCCHHH TQQLAKNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC LASQFYFGRPLTELTTAQQAFLIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISV CHHHHHCCCCHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE NDFQIAAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWGDSLLNESGIKVYTTLDPIAQ EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH EAAEKAVKEVMGRIGKDTKELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIG HHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH SLVKPFVYMTALEDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKS HHHHHHHEEEEECCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH LNVPTVNLGLAVGVDAVINTLDDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNG CCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHHHCCC RYRQLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQYIMTRVVSEGTGARLGRAFPN CEEEHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC VTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPP EEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCC VALRMTPPDDVVQGYFDLNGNALEKGCPGAVALPAKAGSWRPAQNCGKPLSWWQKIIGG EEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]