Click here to switch to the map view.

The map label for this gene is 119776098

Identifier: 119776098

GI number: 119776098

Start: 3530560

End: 3531744

Strand: Reverse

Name: 119776098

Synonym: Sama_2966

Alternate gene names: NA

Gene position: 3531744-3530560 (Counterclockwise)

Preceding gene: 119776101

Following gene: 119776097

Centisome position: 82.02

GC content: 57.64

Gene sequence:

>1185_bases
GTGGCAGGAAGATCAAGAATCAAAATGGCGGGCTTAACAAACAAAGACCAGGGGTCAATAGCTGTGGTTCAAGCAGACAG
TGACGATGTGGCCGGGCTGGCTAAATTGGCCCGGGTGGATATTGCCACCCTGAACCTGTTCAACTTTTTGGCCCCCCCTG
CTGCGGCCTACGAGTTTGACCGCATCTACAGCAATGAGCAGTGGCAGAAGAAATGTAATTGGCTGCGCCACTGCGTAAGC
AGCCTCGAAGCCGACATTATCGGTTTTCAGGAGGTGTTCAGTGTCGATGAGCTTAAGGCTTTGATGCTGGAGCTGGGTTA
CCCGCACTTTGCCGTGGTGGACGAGCCCGGCTGCGAGGATTATGTCTGCCGTGCGCCCGTGGTAGCCATTGCCAGCCGCT
TGCCGCTGCTTGAGGTGGTGGCGGTGGAGCCCGACCCGGCCGCCCTTGCCGCTATGGATCTTAAGGCGGATTTTCGCTTT
GGCCGCAGGGTGCTCAGGGCCACAGTCAACCTGAATGATTGGGGCATGCTGGATATCTATGTGCTGCATTTTAAATCCCA
GCGTCCACTGTTTGAGCCAGAAGCCCTCGGTGATATGCAGGCCGCGCCCAGGCTCTTGGCCCACCGTGCACTCGGCAGCT
TTGCCAGCAGTGCCCGCCGTGGCTTTGAGGCCATGCTCTTGTATCAGGCGATGATAATGCGGCGGGATGAAACTGCTCAT
CCCATGGTGATCATGGGTGACTTTAACAGCGGTTTGGATGCCGCCGAATTTCGCGGTTTCTGGCTGGGGGCCGATGCCAT
TCATGGCAACGATAAACAGGCGGCAGGCCTTGGCGGCTTGAGCGAGCAGGCCTTTGCCAATGCCATCAGCCACTTTACCC
TCAAAGATGCCTCGGTGCTGTTTCTGGAGGGGCAGTTGTTTGACCGGCAAAGTGGCGGCCACCACGGAACTGACTCAACG
GAAGATTTAAGCTGGGCAAGGCGACCAACCCACTATCTGGGCTCCCGCGGCAGCCTGCTGGACCATATACTGCTCAGTCA
GGACTTTGATGGCGCATTGGCACCCGCCCGTGGCCGGGTGTGCCACTTTTCAGTGTTCGATGAACACCTTCGCAGCCCCA
AGTACGAGCGAGACAGCGAAAGCTCAGACCATGCCGCGCTCGTAGTAGGGCTTGAGCTGCTATAA

Upstream 100 bases:

>100_bases
CATTTGACTAACATGTCGCAAAGTGTGGGTCACAATTTCCTTGTTTATTATGCAATTCCCATCGTTTGCCTCATATGGCG
GGAGAGGCGGAGAAGGCTCA

Downstream 100 bases:

>100_bases
AAACCGCTTTTGCAGGAATGCCTCCAGGCGGCCTTAACAGGGTGGCGCAGGCAGGGTAAAATAGCCGCCATCCACGGCAG
CGGCAGCCGCTAAACAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease/Exonuclease/Phosphatase Family

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MAGRSRIKMAGLTNKDQGSIAVVQADSDDVAGLAKLARVDIATLNLFNFLAPPAAAYEFDRIYSNEQWQKKCNWLRHCVS
SLEADIIGFQEVFSVDELKALMLELGYPHFAVVDEPGCEDYVCRAPVVAIASRLPLLEVVAVEPDPAALAAMDLKADFRF
GRRVLRATVNLNDWGMLDIYVLHFKSQRPLFEPEALGDMQAAPRLLAHRALGSFASSARRGFEAMLLYQAMIMRRDETAH
PMVIMGDFNSGLDAAEFRGFWLGADAIHGNDKQAAGLGGLSEQAFANAISHFTLKDASVLFLEGQLFDRQSGGHHGTDST
EDLSWARRPTHYLGSRGSLLDHILLSQDFDGALAPARGRVCHFSVFDEHLRSPKYERDSESSDHAALVVGLELL

Sequences:

>Translated_394_residues
MAGRSRIKMAGLTNKDQGSIAVVQADSDDVAGLAKLARVDIATLNLFNFLAPPAAAYEFDRIYSNEQWQKKCNWLRHCVS
SLEADIIGFQEVFSVDELKALMLELGYPHFAVVDEPGCEDYVCRAPVVAIASRLPLLEVVAVEPDPAALAAMDLKADFRF
GRRVLRATVNLNDWGMLDIYVLHFKSQRPLFEPEALGDMQAAPRLLAHRALGSFASSARRGFEAMLLYQAMIMRRDETAH
PMVIMGDFNSGLDAAEFRGFWLGADAIHGNDKQAAGLGGLSEQAFANAISHFTLKDASVLFLEGQLFDRQSGGHHGTDST
EDLSWARRPTHYLGSRGSLLDHILLSQDFDGALAPARGRVCHFSVFDEHLRSPKYERDSESSDHAALVVGLELL
>Mature_393_residues
AGRSRIKMAGLTNKDQGSIAVVQADSDDVAGLAKLARVDIATLNLFNFLAPPAAAYEFDRIYSNEQWQKKCNWLRHCVSS
LEADIIGFQEVFSVDELKALMLELGYPHFAVVDEPGCEDYVCRAPVVAIASRLPLLEVVAVEPDPAALAAMDLKADFRFG
RRVLRATVNLNDWGMLDIYVLHFKSQRPLFEPEALGDMQAAPRLLAHRALGSFASSARRGFEAMLLYQAMIMRRDETAHP
MVIMGDFNSGLDAAEFRGFWLGADAIHGNDKQAAGLGGLSEQAFANAISHFTLKDASVLFLEGQLFDRQSGGHHGTDSTE
DLSWARRPTHYLGSRGSLLDHILLSQDFDGALAPARGRVCHFSVFDEHLRSPKYERDSESSDHAALVVGLELL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43392; Mature: 43261

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRSRIKMAGLTNKDQGSIAVVQADSDDVAGLAKLARVDIATLNLFNFLAPPAAAYEFD
CCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RIYSNEQWQKKCNWLRHCVSSLEADIIGFQEVFSVDELKALMLELGYPHFAVVDEPGCED
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
YVCRAPVVAIASRLPLLEVVAVEPDPAALAAMDLKADFRFGRRVLRATVNLNDWGMLDIY
HHHHCHHHHHHHCCCEEEEEEECCCCHHEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VLHFKSQRPLFEPEALGDMQAAPRLLAHRALGSFASSARRGFEAMLLYQAMIMRRDETAH
EEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PMVIMGDFNSGLDAAEFRGFWLGADAIHGNDKQAAGLGGLSEQAFANAISHFTLKDASVL
CEEEEECCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECCCEEE
FLEGQLFDRQSGGHHGTDSTEDLSWARRPTHYLGSRGSLLDHILLSQDFDGALAPARGRV
EEECEEECCCCCCCCCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCE
CHFSVFDEHLRSPKYERDSESSDHAALVVGLELL
EEEHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
AGRSRIKMAGLTNKDQGSIAVVQADSDDVAGLAKLARVDIATLNLFNFLAPPAAAYEFD
CCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RIYSNEQWQKKCNWLRHCVSSLEADIIGFQEVFSVDELKALMLELGYPHFAVVDEPGCED
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
YVCRAPVVAIASRLPLLEVVAVEPDPAALAAMDLKADFRFGRRVLRATVNLNDWGMLDIY
HHHHCHHHHHHHCCCEEEEEEECCCCHHEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VLHFKSQRPLFEPEALGDMQAAPRLLAHRALGSFASSARRGFEAMLLYQAMIMRRDETAH
EEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PMVIMGDFNSGLDAAEFRGFWLGADAIHGNDKQAAGLGGLSEQAFANAISHFTLKDASVL
CEEEEECCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECCCEEE
FLEGQLFDRQSGGHHGTDSTEDLSWARRPTHYLGSRGSLLDHILLSQDFDGALAPARGRV
EEECEEECCCCCCCCCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCE
CHFSVFDEHLRSPKYERDSESSDHAALVVGLELL
EEEHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA